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Report for CCDS3784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3784.1 Public Homo sapiens 4 TLR2 24 110 108 CCDS HistoryNCBI Gene:7097Re-query CCDS DB by CCDS ID:3784.1Re-query CCDS DB by GeneID:7097See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3784.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260010.6 ENSP00000260010.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000260010.6Link to Ensembl Protein Viewer:ENSP00000260010.6Re-query CCDS DB by Nucleotide ID:ENST00000260010Re-query CCDS DB by Protein ID:ENSP00000260010
Original member Current member EBI ENST00000642700.2 ENSP00000494425.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000642700.2Link to Ensembl Protein Viewer:ENSP00000494425.1Re-query CCDS DB by Nucleotide ID:ENST00000642700Re-query CCDS DB by Protein ID:ENSP00000494425
Original member Current member EBI ENST00000642580.1 ENSP00000495339.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642580.1Link to Ensembl Protein Viewer:ENSP00000495339.1Re-query CCDS DB by Nucleotide ID:ENST00000642580Re-query CCDS DB by Protein ID:ENSP00000495339
Original member Current member NCBI NM_001318787.2 NP_001305716.1 Accepted alive Link to Nucleotide Sequence:NM_001318787.2Link to Protein Sequence:NP_001305716.1Re-query CCDS DB by Nucleotide ID:NM_001318787Re-query CCDS DB by Protein ID:NP_001305716Link to BLAST:NP_001305716.1
Original member Current member NCBI NM_001318789.2 NP_001305718.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001318789.2Link to Protein Sequence:NP_001305718.1Re-query CCDS DB by Nucleotide ID:NM_001318789Re-query CCDS DB by Protein ID:NP_001305718Link to BLAST:NP_001305718.1
Original member Current member NCBI NM_001318790.2 NP_001305719.1 Accepted alive Link to Nucleotide Sequence:NM_001318790.2Link to Protein Sequence:NP_001305719.1Re-query CCDS DB by Nucleotide ID:NM_001318790Re-query CCDS DB by Protein ID:NP_001305719Link to BLAST:NP_001305719.1
Original member Current member NCBI NM_001318791.2 NP_001305720.1 Accepted alive Link to Nucleotide Sequence:NM_001318791.2Link to Protein Sequence:NP_001305720.1Re-query CCDS DB by Nucleotide ID:NM_001318791Re-query CCDS DB by Protein ID:NP_001305720Link to BLAST:NP_001305720.1
Original member Current member NCBI NM_001318793.2 NP_001305722.1 Accepted alive Link to Nucleotide Sequence:NM_001318793.2Link to Protein Sequence:NP_001305722.1Re-query CCDS DB by Nucleotide ID:NM_001318793Re-query CCDS DB by Protein ID:NP_001305722Link to BLAST:NP_001305722.1
Original member Current member NCBI NM_001318795.2 NP_001305724.1 Accepted alive Link to Nucleotide Sequence:NM_001318795.2Link to Protein Sequence:NP_001305724.1Re-query CCDS DB by Nucleotide ID:NM_001318795Re-query CCDS DB by Protein ID:NP_001305724Link to BLAST:NP_001305724.1
Original member Current member NCBI NM_001318796.2 NP_001305725.1 Accepted alive Link to Nucleotide Sequence:NM_001318796.2Link to Protein Sequence:NP_001305725.1Re-query CCDS DB by Nucleotide ID:NM_001318796Re-query CCDS DB by Protein ID:NP_001305725Link to BLAST:NP_001305725.1
Original member Current member NCBI NM_003264.5 NP_003255.2 Accepted alive Link to Nucleotide Sequence:NM_003264.5Link to Protein Sequence:NP_003255.2Re-query CCDS DB by Nucleotide ID:NM_003264Re-query CCDS DB by Protein ID:NP_003255Link to BLAST:NP_003255.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305716.1 784 O60603 784 100% 0 0
NP_001305718.1 784 O60603 784 100% 0 0
NP_001305719.1 784 O60603 784 100% 0 0
NP_001305720.1 784 O60603 784 100% 0 0
NP_001305722.1 784 O60603 784 100% 0 0
NP_001305724.1 784 O60603 784 100% 0 0
NP_001305725.1 784 O60603 784 100% 0 0
NP_003255.2 784 O60603 784 100% 0 0

Chromosomal Locations for CCDS 3784.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 153702908 153705262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2355 nt):
ATGCCACATACTTTGTGGATGGTGTGGGTCTTGGGGGTCATCATCAGCCTCTCCAAGGAAGAATCCTCCA
ATCAGGCTTCTCTGTCTTGTGACCGCAATGGTATCTGCAAGGGCAGCTCAGGATCTTTAAACTCCATTCC
CTCAGGGCTCACAGAAGCTGTAAAAAGCCTTGACCTGTCCAACAACAGGATCACCTACATTAGCAACAGT
GACCTACAGAGGTGTGTGAACCTCCAGGCTCTGGTGCTGACATCCAATGGAATTAACACAATAGAGGAAG
ATTCTTTTTCTTCCCTGGGCAGTCTTGAACATTTAGACTTATCCTATAATTACTTATCTAATTTATCGTC
TTCCTGGTTCAAGCCCCTTTCTTCTTTAACATTCTTAAACTTACTGGGAAATCCTTACAAAACCCTAGGG
GAAACATCTCTTTTTTCTCATCTCACAAAATTGCAAATCCTGAGAGTGGGAAATATGGACACCTTCACTA
AGATTCAAAGAAAAGATTTTGCTGGACTTACCTTCCTTGAGGAACTTGAGATTGATGCTTCAGATCTACA
GAGCTATGAGCCAAAAAGTTTGAAGTCAATTCAGAATGTAAGTCATCTGATCCTTCATATGAAGCAGCAT
ATTTTACTGCTGGAGATTTTTGTAGATGTTACAAGTTCCGTGGAATGTTTGGAACTGCGAGATACTGATT
TGGACACTTTCCATTTTTCAGAACTATCCACTGGTGAAACAAATTCATTGATTAAAAAGTTTACATTTAG
AAATGTGAAAATCACCGATGAAAGTTTGTTTCAGGTTATGAAACTTTTGAATCAGATTTCTGGATTGTTA
GAATTAGAGTTTGATGACTGTACCCTTAATGGAGTTGGTAATTTTAGAGCATCTGATAATGACAGAGTTA
TAGATCCAGGTAAAGTGGAAACGTTAACAATCCGGAGGCTGCATATTCCAAGGTTTTACTTATTTTATGA
TCTGAGCACTTTATATTCACTTACAGAAAGAGTTAAAAGAATCACAGTAGAAAACAGTAAAGTTTTTCTG
GTTCCTTGTTTACTTTCACAACATTTAAAATCATTAGAATACTTGGATCTCAGTGAAAATTTGATGGTTG
AAGAATACTTGAAAAATTCAGCCTGTGAGGATGCCTGGCCCTCTCTACAAACTTTAATTTTAAGGCAAAA
TCATTTGGCATCATTGGAAAAAACCGGAGAGACTTTGCTCACTCTGAAAAACTTGACTAACATTGATATC
AGTAAGAATAGTTTTCATTCTATGCCTGAAACTTGTCAGTGGCCAGAAAAGATGAAATATTTGAACTTAT
CCAGCACACGAATACACAGTGTAACAGGCTGCATTCCCAAGACACTGGAAATTTTAGATGTTAGCAACAA
CAATCTCAATTTATTTTCTTTGAATTTGCCGCAACTCAAAGAACTTTATATTTCCAGAAATAAGTTGATG
ACTCTACCAGATGCCTCCCTCTTACCCATGTTACTAGTATTGAAAATCAGTAGGAATGCAATAACTACGT
TTTCTAAGGAGCAACTTGACTCATTTCACACACTGAAGACTTTGGAAGCTGGTGGCAATAACTTCATTTG
CTCCTGTGAATTCCTCTCCTTCACTCAGGAGCAGCAAGCACTGGCCAAAGTCTTGATTGATTGGCCAGCA
AATTACCTGTGTGACTCTCCATCCCATGTGCGTGGCCAGCAGGTTCAGGATGTCCGCCTCTCGGTGTCGG
AATGTCACAGGACAGCACTGGTGTCTGGCATGTGCTGTGCTCTGTTCCTGCTGATCCTGCTCACGGGGGT
CCTGTGCCACCGTTTCCATGGCCTGTGGTATATGAAAATGATGTGGGCCTGGCTCCAGGCCAAAAGGAAG
CCCAGGAAAGCTCCCAGCAGGAACATCTGCTATGATGCATTTGTTTCTTACAGTGAGCGGGATGCCTACT
GGGTGGAGAACCTTATGGTCCAGGAGCTGGAGAACTTCAATCCCCCCTTCAAGTTGTGTCTTCATAAGCG
GGACTTCATTCCTGGCAAGTGGATCATTGACAATATCATTGACTCCATTGAAAAGAGCCACAAAACTGTC
TTTGTGCTTTCTGAAAACTTTGTGAAGAGTGAGTGGTGCAAGTATGAACTGGACTTCTCCCATTTCCGTC
TTTTTGATGAGAACAATGATGCTGCCATTCTCATTCTTCTGGAGCCCATTGAGAAAAAAGCCATTCCCCA
GCGCTTCTGCAAGCTGCGGAAGATAATGAACACCAAGACCTACCTGGAGTGGCCCATGGACGAGGCTCAG
CGGGAAGGATTTTGGGTAAATCTGAGAGCTGCGATAAAGTCCTAG

Translation (784 aa):
MPHTLWMVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNS
DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG
ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH
ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL
ELEFDDCTLNGVGNFRASDNDRVIDPGKVETLTIRRLHIPRFYLFYDLSTLYSLTERVKRITVENSKVFL
VPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDI
SKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLM
TLPDASLLPMLLVLKISRNAITTFSKEQLDSFHTLKTLEAGGNNFICSCEFLSFTQEQQALAKVLIDWPA
NYLCDSPSHVRGQQVQDVRLSVSECHRTALVSGMCCALFLLILLTGVLCHRFHGLWYMKMMWAWLQAKRK
PRKAPSRNICYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIPGKWIIDNIIDSIEKSHKTV
FVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNTKTYLEWPMDEAQ
REGFWVNLRAAIKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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