NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS82912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82912.1 Public Homo sapiens 4 PACRGL 24 110 108 CCDS HistoryNCBI Gene:133015Re-query CCDS DB by CCDS ID:82912.1Re-query CCDS DB by GeneID:133015See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82912.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000513459.5 ENSP00000426286.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513459.5Link to Ensembl Protein Viewer:ENSP00000426286.1Re-query CCDS DB by Nucleotide ID:ENST00000513459Re-query CCDS DB by Protein ID:ENSP00000426286
Original member Current member NCBI NM_001317849.3 NP_001304778.1 Accepted alive Link to Nucleotide Sequence:NM_001317849.3Link to Protein Sequence:NP_001304778.1Re-query CCDS DB by Nucleotide ID:NM_001317849Re-query CCDS DB by Protein ID:NP_001304778Link to BLAST:NP_001304778.1
Original member Current member NCBI NM_001330745.2 NP_001317674.1 Accepted alive Link to Nucleotide Sequence:NM_001330745.2Link to Protein Sequence:NP_001317674.1Re-query CCDS DB by Nucleotide ID:NM_001330745Re-query CCDS DB by Protein ID:NP_001317674Link to BLAST:NP_001317674.1
Original member Current member NCBI NM_001330746.2 NP_001317675.1 Accepted alive Link to Nucleotide Sequence:NM_001330746.2Link to Protein Sequence:NP_001317675.1Re-query CCDS DB by Nucleotide ID:NM_001330746Re-query CCDS DB by Protein ID:NP_001317675Link to BLAST:NP_001317675.1
Original member Current member NCBI NM_001330747.2 NP_001317676.1 Accepted alive Link to Nucleotide Sequence:NM_001330747.2Link to Protein Sequence:NP_001317676.1Re-query CCDS DB by Nucleotide ID:NM_001330747Re-query CCDS DB by Protein ID:NP_001317676Link to BLAST:NP_001317676.1
Original member Current member NCBI NM_001330748.2 NP_001317677.1 Accepted alive Link to Nucleotide Sequence:NM_001330748.2Link to Protein Sequence:NP_001317677.1Re-query CCDS DB by Nucleotide ID:NM_001330748Re-query CCDS DB by Protein ID:NP_001317677Link to BLAST:NP_001317677.1

Chromosomal Locations for CCDS 82912.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 20704482 20704533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20704660 20704814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20712788 20712922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20713432 20713539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 20727285 20727341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGCAGAAATCAGAGGGCTCTGGAGGTACACAGTTGAAAAACAGAGCAACAGGTAACTATGATCAAAGGA
CATCATCAAGCACACAGTTAAAACACAGGAATGCAGTTCAGGGAAGCAAATCCTCATTGTCAACCAGTTC
TCCAGAGTCTGCAAGAAAACTTCATCCTAGACCAAGTGATAAACTGAACCCTAAAACAATTAATCCGGGT
CTGAGAGAGACTAAGCATCCATACACTTTTGTGTCAAAGGAGGGTTTTAGAGAATTACTTTTGGTCAAAG
GTGCTCCTGAAAAAGCTATTCCTTTGCTACCTAGACTGATTCCTGTGCTAAAGGCAGCTCTGGTCCATTC
GGATGATGAAGTGTTTGAAAGAGGATTGAATGCTCTAGTTCAGCTAAGTGTCGTTGTTGGTCCTTCTCTA
AACGACCATCTGAAGCATCTGCTTACAAGCGGGAGCCTTAGCATCATCAAATCTAAAATTCCAACATACT
GCTCCATATGCTGTTGA

Translation (168 aa):
MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLNPKTINPG
LRETKHPYTFVSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALVQLSVVVGPSL
NDHLKHLLTSGSLSIIKSKIPTYCSICC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH