CCDS Report for Consensus CDS

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Report for CCDS86187.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
86187.1	Public	Homo sapiens	11	LGR4	24	110	108

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86187.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000389858.4	ENSP00000374508.4		Accepted	alive
		NCBI	NM_001346432.2	NP_001333361.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001333361.1	927	Q9BXB1-2	927	100%	0	0

Chromosomal Locations for CCDS 86187.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)

Genome Browser links:

Chromosome	Start	Stop
11	27367867	27369143
11	27371615	27371698
11	27372283	27372398
11	27373551	27373676
11	27373975	27374046
11	27376299	27376370
11	27377158	27377223
11	27378697	27378768
11	27380271	27380339
11	27380640	27380711
11	27380895	27380966
11	27382188	27382256
11	27384336	27384407
11	27385253	27385468
11	27391094	27391165
11	27392447	27392518
11	27472118	27472302

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2784 nt):
ATGCCGGGCCCGCTAGGGCTGCTCTGCTTCCTCGCCCTGGGGCTGCTCGGCTCGGCCGGGCCCAGCGGCG CGGCGCCGCCTCTCTGCGCGGCGCCCTGCAGCTGCGACGGCGACCGTCGGGTGGACTGCTCCGGGAAGGG GCTGACGGCCGTGCCCGAGGGGCTCAGCGCCTTCACCCAAGCGCTACAATTGGCGGGCAACGACCTTTCT TTTATCCACCCAAAGGCCTTGTCTGGGTTGAAAGAACTCAAAGTTCTAACGCTCCAGAATAATCAGTTGA AAACAGTACCCAGTGAAGCCATTCGAGGGCTGAGTGCTTTGCAGTCTTTGCGTTTAGATGCCAACCATAT TACCTCAGTCCCCGAGGACAGTTTTGAAGGACTTGTTCAGTTACGGCATCTGTGGCTGGATGACAACAGC TTGACGGAGGTGCCTGTGCACCCCCTCAGCAATCTGCCCACCCTACAGGCGCTGACCCTGGCTCTCAACA AGATCTCAAGCATCCCTGACTTTGCATTTACCAACCTTTCAAGCCTGGTAGTTCTGCATCTTCATAACAA TAAAATTAGAAGCCTGAGTCAACACTGTTTTGATGGACTAGATAACCTGGAGACCTTAGACTTGAATTAT AATAACTTGGGGGAATTTCCTCAGGCTATTAAAGCCCTTCCTAGCCTTAAAGAGCTAGGATTTCATAGTA ATTCTATTTCTGTTATCCCTGATGGAGCATTTGATGGTAATCCACTCTTAAGAACTATACATTTGTATGA TAATCCTCTGTCTTTTGTGGGGAACTCAGCATTTCACAATTTATCTGATCTTCATTCCCTAGTCATTCGT GGTGCAAGCATGGTGCAGCAGTTCCCCAATCTTACAGGAACTGTCCACCTGGAAAGTCTGACTTTGACAG GTACAAAGATAAGCAGCATACCTAATAATTTGTGTCAAGAACAAAAGATGCTTAGGACTTTGGACTTGTC TTACAATAATATAAGAGACCTTCCAAGTTTTAATGGTTGCCATGCTCTGGAAGAAATTTCTTTACAGCGT AATCAAATCTACCAAATAAAGGAAGGCACCTTTCAAGGCCTGATATCTCTAAGGATTCTAGATCTGAGTA GAAACCTGATACATGAAATTCACAGTAGAGCTTTTGCCACACTTGGGCCAATAACTAACCTAGATGTAAG TTTCAATGAATTAACTTCCTTTCCTACGGAAGGCCTGAATGGGCTAAATCAACTGAAACTTGTGGGCAAC TTCAAGCTGAAAGAAGCCTTAGCAGCAAAAGACTTTGTTAACCTCAGGTCTTTATCAGTACCATATGCTT ATCAGTGCTGTGCATTTTGGGGTTGTGACTCTTATGCAAATTTAAACACAGAAGATAACAGCCTCCAGGA CCACAGTGTGGCACAGGAGAAAGGTACTGCTGATGCAGCAAATGTCACAAGCACTCTTGAAAATGAAGAA CATAGTCAAATAATTATCCATTGTACACCTTCAACAGGTGCTTTTAAGCCCTGTGAATATTTACTGGGAA GCTGGATGATTCGTCTTACTGTGTGGTTCATTTTCTTGGTTGCATTATTTTTCAACCTGCTTGTTATTTT AACAACATTTGCATCTTGTACATCACTGCCTTCGTCCAAATTGTTTATAGGCTTGATTTCTGTGTCTAAC TTATTCATGGGAATCTATACTGGCATCCTAACTTTTCTTGATGCTGTGTCCTGGGGCAGATTCGCTGAAT TTGGCATTTGGTGGGAAACTGGCAGTGGCTGCAAAGTAGCTGGGTTTCTTGCAGTTTTCTCCTCAGAAAG TGCCATATTTTTATTAATGCTAGCAACTGTCGAAAGAAGCTTATCTGCAAAAGATATAATGAAAAATGGG AAGAGCAATCATCTCAAACAGTTCCGGGTTGCTGCCCTTTTGGCTTTCCTAGGTGCTACAGTAGCAGGCT GTTTTCCCCTTTTCCATAGAGGGGAATATTCTGCATCACCCCTTTGTTTGCCATTTCCTACAGGTGAAAC GCCATCATTAGGATTCACTGTAACGTTAGTGCTATTAAACTCACTAGCATTTTTATTAATGGCCGTTATC TACACTAAACTATACTGCAACTTGGAAAAAGAGGACCTCTCAGAAAACTCACAATCTAGCATGATTAAGC ATGTCGCTTGGCTAATCTTCACCAATTGCATCTTTTTCTGCCCTGTGGCGTTTTTTTCATTTGCACCATT GATCACTGCAATCTCTATCAGCCCCGAAATAATGAAGTCTGTTACTCTGATATTTTTTCCATTGCCTGCT TGCCTGAATCCAGTCCTGTATGTTTTCTTCAACCCAAAGTTTAAAGAAGACTGGAAGTTACTGAAGCGAC GTGTTACCAAGAAAAGTGGATCAGTTTCAGTTTCCATCAGTAGCCAAGGTGGTTGTCTGGAACAGGATTT CTACTACGACTGTGGCATGTACTCACATTTGCAGGGCAACCTGACTGTTTGCGACTGCTGCGAATCGTTT CTTTTAACAAAGCCAGTATCATGCAAACACTTGATAAAATCACACAGCTGTCCTGCATTGGCAGTGGCTT CTTGCCAAAGACCTGAGGGCTACTGGTCCGACTGTGGCACACAGTCGGCCCACTCTGATTATGCAGATGA AGAAGATTCCTTTGTCTCAGACAGTTCTGACCAGGTGCAGGCCTGTGGACGAGCCTGCTTCTACCAGAGT AGAGGATTCCCTTTGGTGCGCTATGCTTACAATCTACCAAGAGTTAAAGACTGA
Translation (927 aa):
MPGPLGLLCFLALGLLGSAGPSGAAPPLCAAPCSCDGDRRVDCSGKGLTAVPEGLSAFTQALQLAGNDLS FIHPKALSGLKELKVLTLQNNQLKTVPSEAIRGLSALQSLRLDANHITSVPEDSFEGLVQLRHLWLDDNS LTEVPVHPLSNLPTLQALTLALNKISSIPDFAFTNLSSLVVLHLHNNKIRSLSQHCFDGLDNLETLDLNY NNLGEFPQAIKALPSLKELGFHSNSISVIPDGAFDGNPLLRTIHLYDNPLSFVGNSAFHNLSDLHSLVIR GASMVQQFPNLTGTVHLESLTLTGTKISSIPNNLCQEQKMLRTLDLSYNNIRDLPSFNGCHALEEISLQR NQIYQIKEGTFQGLISLRILDLSRNLIHEIHSRAFATLGPITNLDVSFNELTSFPTEGLNGLNQLKLVGN FKLKEALAAKDFVNLRSLSVPYAYQCCAFWGCDSYANLNTEDNSLQDHSVAQEKGTADAANVTSTLENEE HSQIIIHCTPSTGAFKPCEYLLGSWMIRLTVWFIFLVALFFNLLVILTTFASCTSLPSSKLFIGLISVSN LFMGIYTGILTFLDAVSWGRFAEFGIWWETGSGCKVAGFLAVFSSESAIFLLMLATVERSLSAKDIMKNG KSNHLKQFRVAALLAFLGATVAGCFPLFHRGEYSASPLCLPFPTGETPSLGFTVTLVLLNSLAFLLMAVI YTKLYCNLEKEDLSENSQSSMIKHVAWLIFTNCIFFCPVAFFSFAPLITAISISPEIMKSVTLIFFPLPA CLNPVLYVFFNPKFKEDWKLLKRRVTKKSGSVSVSISSQGGCLEQDFYYDCGMYSHLQGNLTVCDCCESF LLTKPVSCKHLIKSHSCPALAVASCQRPEGYWSDCGTQSAHSDYADEEDSFVSDSSDQVQACGRACFYQS RGFPLVRYAYNLPRVKD

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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