NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS93159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93159.1 Public Homo sapiens 22 FOXRED2 24 110 108 CCDS HistoryNCBI Gene:80020Re-query CCDS DB by CCDS ID:93159.1Re-query CCDS DB by GeneID:80020See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93159.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000685612.1 ENSP00000508644.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000685612.1Link to Ensembl Protein Viewer:ENSP00000508644.1Re-query CCDS DB by Nucleotide ID:ENST00000685612Re-query CCDS DB by Protein ID:ENSP00000508644
Original member Current member EBI ENST00000685224.1 ENSP00000508709.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000685224.1Link to Ensembl Protein Viewer:ENSP00000508709.1Re-query CCDS DB by Nucleotide ID:ENST00000685224Re-query CCDS DB by Protein ID:ENSP00000508709
Original member Current member EBI ENST00000691242.1 ENSP00000509129.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691242.1Link to Ensembl Protein Viewer:ENSP00000509129.1Re-query CCDS DB by Nucleotide ID:ENST00000691242Re-query CCDS DB by Protein ID:ENSP00000509129
Original member Current member NCBI NM_001363041.2 NP_001349970.1 Accepted alive Link to Nucleotide Sequence:NM_001363041.2Link to Protein Sequence:NP_001349970.1Re-query CCDS DB by Nucleotide ID:NM_001363041Re-query CCDS DB by Protein ID:NP_001349970Link to BLAST:NP_001349970.1
Original member Current member NCBI NM_001363042.2 NP_001349971.1 Accepted alive Link to Nucleotide Sequence:NM_001363042.2Link to Protein Sequence:NP_001349971.1Re-query CCDS DB by Nucleotide ID:NM_001363042Re-query CCDS DB by Protein ID:NP_001349971Link to BLAST:NP_001349971.1

Chromosomal Locations for CCDS 93159.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 36490008 36490267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36493633 36493803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36495967 36496208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36497991 36498156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36501241 36501407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36504515 36504766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36505896 36506422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGGGCCTCTCCGCTGCGGCCCCGTTGTGGGGTCCCCCGGGGCTGCTCCTGGCCATCGCCCTGCACCCAG
CGCTGTCGGTGCCCCCGCGCCGGGACTACTGCGTGCTGGGCGCTGGGCCCGCGGGCCTGCAGATGGCCTA
CTTCCTGCAGCGCGCTGGACGCGACTACGCAGTGTTCGAGCGGGCCCCGCGGCCCGGCAGCTTCTTCACA
CGCTACCCGCGGCACCGCAAGCTCATCAGCATCAACAAGCGGTACACGGGCAAGGCTAACGCCGAGTTCA
ACCTCCGCCACGACTGGAACTCTCTGCTCAGCCACGACCCCCGGCTGCTCTTCAGACACTACTCGCGTGC
CTACTTCCCCGACGCCCGCGACATGGTGCGCTACCTGGGTGACTTCGCGGACACGCTGGGGCTCCGTGTC
CAGTACAACACCACCATCGCCCACGTCACTCTGGACAAGGACCGACAGGCCTGGAATGGCCACTACTTCA
TCCTAACTGACCAGAAGGGCCAGGTGCATCAGTGCAGCGTCCTCTTTGTAGCCACTGGTTTATCAGTCCC
CAACCAGGTTGACTTCCCTGGCTCCGAATATGCAGAGGGTTACGAGTCCGTGTCCGTGGACCCTGAGGAC
TTTGTAGGCCAGAATGTGCTGATCCTGGGTCGTGGGAACTCGGCCTTTGAGACAGCAGAGAACATCTTGG
GTGTCACAAACTTTATCCATATGCTCAGCCGCTCCCGGGTCCGTCTGTCCTGGGCCACCCACTACGTTGG
AGACCTCAGGTCCCTCAGACTTAACTCGGGAAATGCATTCGGCAAGAAGTACCCGCTGATTCGAGCTAGC
TACGAATCCAAAGGAAGCCGGGGTCTGTTTATCCTGGGTACTGCCAGCCACTCGGTGGACTACCGGAAAT
CTGCTGGGGGCTTCATCCACGGATTCCGATACACAGTGCGTGCTGTTCACCGGCTCCTGGAGCACCGCCA
CCACAGCGTCACCTGGCCCGCCACTGAGCTCCCCATCACACAGCTGACCAGCTCCATCGTGCGGCGCGTG
AATGAGGCTTCTGGGCTCTACCAGATGTTCGGTGTGCTGGCCGATGTCATCCTGTTGAAGGAGAATTCCA
CGGCCTTTGAGTACCTGGAGGAGTTCCCCATACAGATGCTGGCCCAGCTGGAGACACTCACAGGGAGGAA
GGCAAAGCACGGGCTCTTCGTCATCAACATGGAATATGGCAGAAATTTCTCTGGCCCCGACAAGGACGTC
TTCTTTGATGACCGGTCTGTGGGGCACACAGAAGATGCCTGGCAGTCTAACTTTCTTCATCCTGTCATCT
ACTACTATAGATACCTCCCCACCGAACAGGAGGTGAGGTTCCGCCCTGCACACTGGCCCCTGCCTCGGCC
CACGGCCATCCATCACATCGTGGAAGACTTCTTAACAGACTGGACTGCCCCGATCGGGCACATCCTACCT
CTGAGGCGCTTCCTGGAGAACTGTTTGGACACCGATTTGCGAAGCTTCTATGCAGAGTCCTGCTTCCTGT
TCGCCCTCACGCGCCAGAAGTTGCCACCCTTTTGCCAGCAGGGGTACCTGAGGATGCAGGGACTCGTGAG
TACCGAGAGCCTTTGGCAGCACAGAGTGGAGAGCAGGCTCCTGCGGGACTATGCCCCCACAGGCAGGCGC
CTGGAGGACAGCAGCCAGCAGCTTGGCGACCAAGAGCCACTAGGTTCCCCCCTGGCTCCAGGGCCTCTGG
CTCAGTCCGTCGATAGCAACAAAGAGGAGCTCTGA

Translation (594 aa):
MGLSAAAPLWGPPGLLLAIALHPALSVPPRRDYCVLGAGPAGLQMAYFLQRAGRDYAVFERAPRPGSFFT
RYPRHRKLISINKRYTGKANAEFNLRHDWNSLLSHDPRLLFRHYSRAYFPDARDMVRYLGDFADTLGLRV
QYNTTIAHVTLDKDRQAWNGHYFILTDQKGQVHQCSVLFVATGLSVPNQVDFPGSEYAEGYESVSVDPED
FVGQNVLILGRGNSAFETAENILGVTNFIHMLSRSRVRLSWATHYVGDLRSLRLNSGNAFGKKYPLIRAS
YESKGSRGLFILGTASHSVDYRKSAGGFIHGFRYTVRAVHRLLEHRHHSVTWPATELPITQLTSSIVRRV
NEASGLYQMFGVLADVILLKENSTAFEYLEEFPIQMLAQLETLTGRKAKHGLFVINMEYGRNFSGPDKDV
FFDDRSVGHTEDAWQSNFLHPVIYYYRYLPTEQEVRFRPAHWPLPRPTAIHHIVEDFLTDWTAPIGHILP
LRRFLENCLDTDLRSFYAESCFLFALTRQKLPPFCQQGYLRMQGLVSTESLWQHRVESRLLRDYAPTGRR
LEDSSQQLGDQEPLGSPLAPGPLAQSVDSNKEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH