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Report for CCDS4446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4446.1 Public Homo sapiens 5 HNRNPH1 24 110 108 CCDS HistoryNCBI Gene:3187Re-query CCDS DB by CCDS ID:4446.1Re-query CCDS DB by GeneID:3187See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4446.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356731.9 ENSP00000349168.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356731.9Link to Ensembl Protein Viewer:ENSP00000349168.5Re-query CCDS DB by Nucleotide ID:ENST00000356731Re-query CCDS DB by Protein ID:ENSP00000349168
Original member Current member EBI ENST00000393432.9 ENSP00000377082.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393432.9Link to Ensembl Protein Viewer:ENSP00000377082.4Re-query CCDS DB by Nucleotide ID:ENST00000393432Re-query CCDS DB by Protein ID:ENSP00000377082
Original member Current member EBI ENST00000442819.6 ENSP00000397797.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442819.6Link to Ensembl Protein Viewer:ENSP00000397797.2Re-query CCDS DB by Nucleotide ID:ENST00000442819Re-query CCDS DB by Protein ID:ENSP00000397797
Original member Current member NCBI NM_001257293.2 NP_001244222.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001257293.2Link to Protein Sequence:NP_001244222.1Re-query CCDS DB by Nucleotide ID:NM_001257293Re-query CCDS DB by Protein ID:NP_001244222Link to BLAST:NP_001244222.1
Original member Current member NCBI NM_001364233.2 NP_001351162.1 Accepted alive Link to Nucleotide Sequence:NM_001364233.2Link to Protein Sequence:NP_001351162.1Re-query CCDS DB by Nucleotide ID:NM_001364233Re-query CCDS DB by Protein ID:NP_001351162Link to BLAST:NP_001351162.1
Original member Current member NCBI NM_001364234.2 NP_001351163.1 Accepted alive Link to Nucleotide Sequence:NM_001364234.2Link to Protein Sequence:NP_001351163.1Re-query CCDS DB by Nucleotide ID:NM_001364234Re-query CCDS DB by Protein ID:NP_001351163Link to BLAST:NP_001351163.1
Original member Current member NCBI NM_001364235.2 NP_001351164.1 Accepted alive Link to Nucleotide Sequence:NM_001364235.2Link to Protein Sequence:NP_001351164.1Re-query CCDS DB by Nucleotide ID:NM_001364235Re-query CCDS DB by Protein ID:NP_001351164Link to BLAST:NP_001351164.1
Original member Current member NCBI NM_001364236.2 NP_001351165.1 Accepted alive Link to Nucleotide Sequence:NM_001364236.2Link to Protein Sequence:NP_001351165.1Re-query CCDS DB by Nucleotide ID:NM_001364236Re-query CCDS DB by Protein ID:NP_001351165Link to BLAST:NP_001351165.1
Original member Current member NCBI NM_001364237.2 NP_001351166.1 Accepted alive Link to Nucleotide Sequence:NM_001364237.2Link to Protein Sequence:NP_001351166.1Re-query CCDS DB by Nucleotide ID:NM_001364237Re-query CCDS DB by Protein ID:NP_001351166Link to BLAST:NP_001351166.1
Original member Current member NCBI NM_001364238.2 NP_001351167.1 Accepted alive Link to Nucleotide Sequence:NM_001364238.2Link to Protein Sequence:NP_001351167.1Re-query CCDS DB by Nucleotide ID:NM_001364238Re-query CCDS DB by Protein ID:NP_001351167Link to BLAST:NP_001351167.1
Original member Current member NCBI NM_001364239.2 NP_001351168.1 Accepted alive Link to Nucleotide Sequence:NM_001364239.2Link to Protein Sequence:NP_001351168.1Re-query CCDS DB by Nucleotide ID:NM_001364239Re-query CCDS DB by Protein ID:NP_001351168Link to BLAST:NP_001351168.1
Original member Current member NCBI NM_001395182.1 NP_001382111.1 Accepted alive Link to Nucleotide Sequence:NM_001395182.1Link to Protein Sequence:NP_001382111.1Re-query CCDS DB by Nucleotide ID:NM_001395182Re-query CCDS DB by Protein ID:NP_001382111Link to BLAST:NP_001382111.1
Original member Current member NCBI NM_005520.3 NP_005511.1 Accepted alive Link to Nucleotide Sequence:NM_005520.3Link to Protein Sequence:NP_005511.1Re-query CCDS DB by Nucleotide ID:NM_005520Re-query CCDS DB by Protein ID:NP_005511Link to BLAST:NP_005511.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001244222.1 449 P31943 449 100% 0 0
NP_001351162.1 449 P31943 449 100% 0 0
NP_001351163.1 449 P31943 449 100% 0 0
NP_001351164.1 449 P31943 449 100% 0 0
NP_001351165.1 449 P31943 449 100% 0 0
NP_001351166.1 449 P31943 449 100% 0 0
NP_001351167.1 449 P31943 449 100% 0 0
NP_001351168.1 449 P31943 449 100% 0 0
NP_001382111.1 449 P31943 449 100% 0 0
NP_005511.1 449 P31943 449 100% 0 0

Chromosomal Locations for CCDS 4446.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 179615546 179615595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179616126 179616218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179616869 179616958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179617051 179617110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179617514 179617649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179617799 179617932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179617989 179618060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179618145 179618323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179619269 179619407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179620892 179621035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179621242 179621397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179623037 179623133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGATGTTGGGCACGGAAGGTGGAGAGGGATTCGTGGTGAAGGTCCGGGGCTTGCCCTGGTCTTGCTCGG
CCGATGAAGTGCAGAGGTTTTTTTCTGACTGCAAAATTCAAAATGGGGCTCAAGGTATTCGTTTCATCTA
CACCAGAGAAGGCAGACCAAGTGGCGAGGCTTTTGTTGAACTTGAATCAGAAGATGAAGTCAAATTGGCC
CTGAAAAAAGACAGAGAAACTATGGGACACAGATATGTTGAAGTATTCAAGTCAAACAACGTTGAAATGG
ATTGGGTGTTGAAGCATACTGGTCCAAATAGTCCTGACACGGCCAATGATGGCTTTGTACGGCTTAGAGG
ACTTCCCTTTGGATGTAGCAAGGAAGAAATTGTTCAGTTCTTCTCAGGGTTGGAAATCGTGCCAAATGGG
ATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCTTCACAGGAAA
TAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATTGAAATCTTTAAGAGCAG
TAGAGCTGAAGTTAGAACTCATTATGATCCACCACGAAAGCTTATGGCCATGCAGCGGCCAGGTCCTTAT
GACAGACCTGGGGCTGGTAGAGGGTATAACAGCATTGGCAGAGGAGCTGGCTTTGAGAGGATGAGGCGTG
GTGCTTATGGTGGAGGCTATGGAGGCTATGATGATTACAATGGCTATAATGATGGCTATGGATTTGGGTC
AGATAGATTTGGAAGAGACCTCAATTACTGTTTTTCAGGAATGTCTGATCACAGATACGGGGATGGTGGC
TCTACTTTCCAGAGCACAACAGGACACTGTGTACACATGCGGGGATTACCTTACAGAGCTACTGAGAATG
ACATTTATAATTTTTTTTCACCGCTCAACCCTGTGAGAGTACACATTGAAATTGGTCCTGATGGCAGAGT
AACTGGTGAAGCAGATGTCGAGTTCGCAACTCATGAAGATGCTGTGGCAGCTATGTCAAAAGACAAAGCA
AATATGCAACACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTACGAAC
ACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTATGGTAGCCAAATGAT
GGGAGGCATGGGCTTGTCAAACCAGTCCAGCTACGGGGGCCCAGCCAGCCAGCAGCTGAGTGGGGGTTAC
GGAGGCGGCTACGGTGGCCAGAGCAGCATGAGTGGATACGACCAAGTTTTACAGGAAAACTCCAGTGATT
TTCAATCAAACATTGCATAG

Translation (449 aa):
MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA
LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG
ITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPY
DRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGG
STFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA
NMQHRYVELFLNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
GGGYGGQSSMSGYDQVLQENSSDFQSNIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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