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Report for CCDS43990.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
43990.1 |
Public |
Homo sapiens |
X |
STAG2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:10735](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:43990.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:10735](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome X in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 43990.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000218089.13 |
ENSP00000218089.9 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000218089.13](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000218089.9](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000218089](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000218089](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000371145.8 |
ENSP00000360187.4 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000371145.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000360187.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000371145](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000360187](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000687852.1 |
ENSP00000509048.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000687852.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000509048.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000687852](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000509048](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001042749.2 |
NP_001036214.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001042749.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001036214.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001042749](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001036214](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001036214.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001042750.2 |
NP_001036215.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001042750.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001036215.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001042750](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001036215](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001036215.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375366.1 |
NP_001362295.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375366.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362295.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375366](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362295](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362295.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375367.1 |
NP_001362296.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375367.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362296.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375367](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362296](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362296.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375368.1 |
NP_001362297.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375368.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362297.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375368](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362297](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362297.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375369.1 |
NP_001362298.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375369.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362298.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375369](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362298](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362298.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375370.1 |
NP_001362299.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375370.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362299.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375370](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362299](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362299.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375371.1 |
NP_001362300.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375371.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362300.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375371](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362300](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362300.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375372.1 |
NP_001362301.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375372.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362301.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375372](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362301](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362301.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 43990.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3807 nt): ATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCTACTACAGGAGTCAGAAACACATTTTTCTTCTG ACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAACTTGTAAAAAAGGCAA AAAGGGCCCAGCAGAAAAGGGCAAAGGTGGAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATG AATGGTCATCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAGTTGTTAAAATGGGCAAGAGTG CTATGCAGTCGGTGGTAGATGATTGGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCT TATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCACAGCAGAAATGTTTAGACATATGCAG AACTCTGAGATAATTCGAAAAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTACCATGG CTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTGAATTCATTGGCGTGTTAGTACGGCAATGTCA ATATAGTATCATATATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATTGTCTGACTCA CAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGG CACTAAATCTTAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAACGGAATAAAATGATTGG AAAACGAGCCAATGAGAGGCTAGAACTCCTGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAA ATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGATACCGTGATGCGATAGCTGAAA TTCGAGCTATTTGCATTGAAGAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACAG TTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAAGTAAGACTCAAATGTCTTACTGCT CTACAAGGGCTTTATTATAACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCAAGGATA GAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGCAGTACAAGCAATAAAATTACTCACTCTTGT TTTACAGAGTAGTGAAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGGTTTATTCAGCT CACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTCTCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGG AGGATGGAATGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTAAGACATTGGTTTTTTT CTTTCTAGAAAGTGAGTTACATGAGCATGCAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAG CTGCTGAAAGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCACTTAGTGGAGAGGAAGCACTAA CAGATAGGCAAGAGAGTGCTCTGATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATCC TCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGGAGAAGAAGACACAGTTGGATGATAGG ACAAAAATCACTGAGCTTTTTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATGCAGAAA AGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATTTGGAAATATATACCACTGGACGATTAGAAAA GCATTTGGATGCCTTATTGCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAGATGTTTTGGAA GCATGTTCTAAAACTTACCATGCACTCTGTAATGAAGAGTTCACAATCTTCAACAGAGTAGATATTTCAA GAAGTCAACTGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATTTTCTGCAAGAGGGTGA AGAACCTGATGAAGATGATGCATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCC CATGACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGAAAACTGGAATCGAAAATGGAG ACATGCCTGAGCAGATTGTTATTCACGCACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTAA GATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAAAGAAACAAATGAGAGTATTTTGTCAG ATATGTCAACATTACCTGACCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGTGTGATA TTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGCGTGACATGTTAGAGCCATTAGTGTATACCCC TGATTCTTCATTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACAGGATGATGAT AATAATAGTGCAGATGGTCAGCAAGAGGATGAAGCCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATT TACTTGCAGCATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAGCTGCAGATATCTTCAA ACAGTATATGAAGTATTATAATGACTATGGAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATA GACAAAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTTTTAATGAAATGATACAAGAAA ATGGCTATAATTTTGATAGATCATCCTCTACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTTT AACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCATGCTACACAAAGATGGCATAGAATTT GCTTTTAAAGAGCCTAATCCGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATATTCTGA GTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAACAGTGTATGTTTACTTGGAAAAGTTCATGAC CTTTCAGATGTCACTCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATTCTTTGCTAGCT GGTGGTGATGATGACACCATGTCAGTCATTAGTGGAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAA AATCAAAACCATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCACTCACTGAAGAAAGTAG TAGTAGTGACAGTATGTGGTTAAGCAGAGAACAAACACTGCACACCCCTGTTATGATGCAGACACCACAA CTCACCTCCACTATTATGAGAGAGCCCAAAAGATTACGGCCTGAGGATAGCTTCATGAGTGTTTATCCAA TGCAGACTGAACATCATCAAACACCTCTTGATTATAACACGCAGGTAACATGGATGTTAGCTCAAAGACA ACAAGAGGAAGCAAGGCAACAGCAGGAGAGAGCAGCAATGAGCTATGTTAAACTGCGAACTAATCTTCAG CATGCCATTCGGCGTGGCACAAGCCTAATGGAAGATGATGAAGAGCCAATTGTGGAAGATGTTATGATGT CCTCAGAAGGGAGGATTGAGGATCTTAATGAGGGAATGGATTTTGACACCATGGATATAGATTTGCCACC ATCAAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCTTTGATCCAGCTTCAATTATGGATGAA TCAGTTCTTGGAGTGTCAATGTTTTAA
Translation (1268 aa): MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRM NGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQ NSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIYDEYMMDTVISLLTGLSDS QVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDE IENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTA LQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSA HRPVAVAAGEFLYKKLFSRRDPEEDGMMKRRGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATE LLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDR TKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNA HDLSKWDLFACNYKLLKTGIENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQ ICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVYTPDSSLQSELLSFILDHVFIEQDDD NNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKETMSKTRQI DKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEF AFKEPNPQGESHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLA GGDDDTMSVISGISSRGSTVRSKKSKPSTGKRKVVEGMQLSLTEESSSSDSMWLSREQTLHTPVMMQTPQ LTSTIMREPKRLRPEDSFMSVYPMQTEHHQTPLDYNTQVTWMLAQRQQEEARQQQERAAMSYVKLRTNLQ HAIRRGTSLMEDDEEPIVEDVMMSSEGRIEDLNEGMDFDTMDIDLPPSKNRRERTELKPDFFDPASIMDE SVLGVSMF
|