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Report for CCDS48049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48049.1 Public Homo sapiens 9 GFI1B 24 110 108 CCDS HistoryNCBI Gene:8328Re-query CCDS DB by CCDS ID:48049.1Re-query CCDS DB by GeneID:8328See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48049.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372123.5 ENSP00000361196.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372123.5Link to Ensembl Protein Viewer:ENSP00000361196.1Re-query CCDS DB by Nucleotide ID:ENST00000372123Re-query CCDS DB by Protein ID:ENSP00000361196
Original member Current member NCBI NM_001135031.2 NP_001128503.1 Accepted alive Link to Nucleotide Sequence:NM_001135031.2Link to Protein Sequence:NP_001128503.1Re-query CCDS DB by Nucleotide ID:NM_001135031Re-query CCDS DB by Protein ID:NP_001128503Link to BLAST:NP_001128503.1
Original member Current member NCBI NM_001377305.1 NP_001364234.1 Accepted alive Link to Nucleotide Sequence:NM_001377305.1Link to Protein Sequence:NP_001364234.1Re-query CCDS DB by Nucleotide ID:NM_001377305Re-query CCDS DB by Protein ID:NP_001364234Link to BLAST:NP_001364234.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128503.1 284 Q5VTD9-2 284 100% 0 0
NP_001364234.1 284 Q5VTD9-2 284 100% 0 0

Chromosomal Locations for CCDS 48049.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 132986679 132986778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132987282 132987419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132988197 132988468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132989742 132989907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132990872 132991050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGCCACGCTCCTTCCTGGTGAAGAGCAAGAAGGCTCACACCTACCACCAGCCCCGTGTGCAGGAAGATG
AACCGCTCTGGCCTCCTGCCCTTACCCCGGTGCCCAGAGACCAGGCTCCAAGCAACAGCCCTGTCCTTAG
CACTCTATTCCCAAACCAGTGCCTGGACTGGACCAACCTCAAACGAGAGCCGGAGCTGGAGCAGGACCAG
AACTTGGCCAGGATGGCCCCGGCACCAGAGGGCCCCATTGTGCTGTCCCGACCCCAGGATGGGGACTCTC
CACTGTCCGACTCACCCCCATTCTACAAGCCTAGCTTCTCCTGGGACACCTTGGCCACAACCTATGGCCA
CAGCTACCGGCAGGCCCCCTCCACCATGCAGTCAGCCTTCCTGGAGCACTCCGTCAGCCTGTACGGCAGT
CCTCTTGTGCCCAGCACTGAGCCCGCCTTGGACTTCAGCCTCCGCTACTCCCCAGGCATGGATGCGTACC
ACTGTGTGAAGTGCAACAAGGAGCGCAGCTTCGAGTGCCGCATGTGCGGCAAGGCCTTCAAGCGCTCGTC
CACGCTGTCCACCCACCTGCTCATCCACTCAGACACGCGGCCCTACCCCTGCCAGTTCTGCGGCAAGCGT
TTCCACCAGAAGTCCGACATGAAGAAGCACACCTACATCCACACAGGTGAGAAGCCGCACAAGTGCCAGG
TGTGCGGAAAGGCCTTCAGCCAGAGCTCCAACCTCATCACCCACAGCCGCAAGCACACAGGCTTCAAGCC
CTTCAGCTGTGAGCTGTGCACCAAAGGCTTCCAGCGCAAGGTGGACCTGCGGCGGCACCGCGAGAGCCAG
CACAATCTCAAGTGA

Translation (284 aa):
MPRSFLVKSKKAHTYHQPRVQEDEPLWPPALTPVPRDQAPSNSPVLSTLFPNQCLDWTNLKREPELEQDQ
NLARMAPAPEGPIVLSRPQDGDSPLSDSPPFYKPSFSWDTLATTYGHSYRQAPSTMQSAFLEHSVSLYGS
PLVPSTEPALDFSLRYSPGMDAYHCVKCNKERSFECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKR
FHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQ
HNLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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