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Report for CCDS93076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93076.1 Public Homo sapiens 21 LIPI 24 110 108 CCDS HistoryNCBI Gene:149998Re-query CCDS DB by CCDS ID:93076.1Re-query CCDS DB by GeneID:149998See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 93076.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000679868.1 ENSP00000506458.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679868.1Link to Ensembl Protein Viewer:ENSP00000506458.1Re-query CCDS DB by Nucleotide ID:ENST00000679868Re-query CCDS DB by Protein ID:ENSP00000506458
Original member Current member NCBI NM_001379566.1 NP_001366495.1 Accepted alive Link to Nucleotide Sequence:NM_001379566.1Link to Protein Sequence:NP_001366495.1Re-query CCDS DB by Nucleotide ID:NM_001379566Re-query CCDS DB by Protein ID:NP_001366495Link to BLAST:NP_001366495.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001366495.1 295 Q6XZB0-8 295 100% 0 0

Chromosomal Locations for CCDS 93076.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 14108993 14109080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14144623 14144799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14152573 14152684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14163419 14163523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14165223 14165390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14166362 14166451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14181758 14181859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14210800 14210845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGAGAGTATACATTTTTCTTTGTTTGATGTGCTGGGTGAGATCTGGTCTTGACCCTGCTGGGCCAAGGT
TCTCCAGAAAACCACCATATAGCAGATTAGATTACACGGATGCAAAGTTTGTGGATGTCATCCATTCTGA
CTCCAATGGTTTAGGCATTCAAGAGCCCTTGGGACATATAGATTTTTATCCAAATGGAGGAAATAAACAA
CCTGGCTGTCCTAAATCAATTTTCTCAGGAATTCAATTCATTAAATGCAACCACCAGAGAGCAGTTCACT
TGTTCATGGCATCTTTAGAAACAAACTGCAATTTTATTTCATTTCCTTGTCGTTCATACAAAGATTACAA
GACTAGCTTATGTGTGGACTGTGACTGTTTTAAGGAAAAATCATGTCCTCGGCTGGGTTATCAAGCCAAG
CTATTTAAAGGTGTTTTAAAAGAAAGGATGGAAGGAAGACCTCTTAGGACCACTGTGTTTTTGGATACAA
GTGGTACATATCCATTCTGTACCTATTATTTTGTTCTCAGTATAATTGTTCCAGATAAAACTATGATGGA
TGGCTCGTTTTCATTTAAATTATTAAATCAGCTTGGAATGATTGAAGAGCCAAGGCTTTATGAAAAGAAC
AAACCATTTTATAAACTTCAAGAAGTCAAGATTCTTGCTCAATTTTATAATGACTTTGTAAATATTTCAA
GCATTGGTTTGACATATTTCCAGAGCTCAAATCTGCAGTGTTCCACATGCACATACAAGATCCAGAGTCT
CATGTTAAAATCACTTACATACCCAGAAAGACCACCACTTTGCAGGTATAATATTGTACTTAAAGACAGA
GAGGAAGTGTTTCTTAATCCAAACACATGTACACCAAAGAACACATAA

Translation (295 aa):
MRVYIFLCLMCWVRSGLDPAGPRFSRKPPYSRLDYTDAKFVDVIHSDSNGLGIQEPLGHIDFYPNGGNKQ
PGCPKSIFSGIQFIKCNHQRAVHLFMASLETNCNFISFPCRSYKDYKTSLCVDCDCFKEKSCPRLGYQAK
LFKGVLKERMEGRPLRTTVFLDTSGTYPFCTYYFVLSIIVPDKTMMDGSFSFKLLNQLGMIEEPRLYEKN
KPFYKLQEVKILAQFYNDFVNISSIGLTYFQSSNLQCSTCTYKIQSLMLKSLTYPERPPLCRYNIVLKDR
EEVFLNPNTCTPKNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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