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Report for CCDS86972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86972.1 Public Homo sapiens 20 LKAAEAR1 24 110 108 CCDS HistoryNCBI Gene:198437Re-query CCDS DB by CCDS ID:86972.1Re-query CCDS DB by GeneID:198437See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86972.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302096.5 ENSP00000302763.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302096.5Link to Ensembl Protein Viewer:ENSP00000302763.4Re-query CCDS DB by Nucleotide ID:ENST00000302096Re-query CCDS DB by Protein ID:ENSP00000302763
Original member Current member NCBI NM_001353425.2 NP_001340354.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001353425.2Link to Protein Sequence:NP_001340354.1Re-query CCDS DB by Nucleotide ID:NM_001353425Re-query CCDS DB by Protein ID:NP_001340354Link to BLAST:NP_001340354.1
Original member Current member NCBI NM_001386971.1 NP_001373900.1 Accepted alive Link to Nucleotide Sequence:NM_001386971.1Link to Protein Sequence:NP_001373900.1Re-query CCDS DB by Nucleotide ID:NM_001386971Re-query CCDS DB by Protein ID:NP_001373900Link to BLAST:NP_001373900.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001340354.1 194 Q8TD35-1 194 100% 0 0
NP_001373900.1 194 Q8TD35-1 194 100% 0 0

Chromosomal Locations for CCDS 86972.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 64083435 64083494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64083583 64083705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64083818 64084219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGCCGCCGCCAGCGAAGGAGGGCGGGCGCAAGGGCCCGCGGGAGCGAAGCGGGAAGAGCGCGCCAGGCA
CGGCGCAGGGTGAGGAGCGTGCCAAGGGGGCGCCCGCGACAGAGCCCCCCAAGCCGGGCTGGGCCCTGAC
GCCGCAGGGACTGGCGGCCATGCTCCCTGCGCAGCGCCACCGCCATCTGCTCTTCGGCGACCTGCTGGAG
GACGTGGGCGCGGCGGCCTCCACCTTCCCGTGCGGGTCGGTGGAACCGGGGTACCGCATGCCCGACCCGC
GCCCGTGGACGCAGTCGCTCGAGCTGCCCGCCGAGCGCCAGAACCGGCTCCTCGGCGTCCTCAAGGCAGC
GGAGGCCCGCGGGCGAGTCCGCGCCCTGCGGCTGCGCTACACCCGCATGCGGGCCGAGGAGATCGCGCTG
CTCATCCAGCGGCAGAAGTCCGCGCGCGCCGCCATCCGGCTGGAGCTGTTCCTGCCGCCGCAGCTGAAGC
CCGCGCGGATCCCGGACCCCCTGGACCGCCAAGAGCGGAGGCGCGTGGAGACCATCCTGGAGGAGAACGT
GGATGGCACCATCTTCCCGCGGTGA

Translation (194 aa):
MPPPAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQGLAAMLPAQRHRHLLFGDLLE
DVGAAASTFPCGSVEPGYRMPDPRPWTQSLELPAERQNRLLGVLKAAEARGRVRALRLRYTRMRAEEIAL
LIQRQKSARAAIRLELFLPPQLKPARIPDPLDRQERRRVETILEENVDGTIFPR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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