CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS45121.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
45121.1 |
Public |
Homo sapiens |
14 |
SYT16 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:83851](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:45121.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:83851](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 14 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 45121.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000568344.5 |
ENSP00000478637.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000568344.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000478637.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000568344](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000478637](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000683842.1 |
ENSP00000508274.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000683842.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000508274.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000683842](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000508274](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001367656.1 |
NP_001354585.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001367656.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001354585.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001367656](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001354585](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001354585.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001367661.1 |
NP_001354590.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001367661.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001354590.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001367661](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001354590](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001354590.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001367663.1 |
NP_001354592.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001367663.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001354592.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001367663](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001354592](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001354592.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001387087.1 |
NP_001374016.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001387087.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001374016.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001387087](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001374016](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001374016.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 45121.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1938 nt): ATGGTGTTGGCCATGGCGTCTCAGGATGTTCAGAACTTCTTCCAGCCTTTCTCTTCCTGGATATCTCGGG TTTATGAAGCTCTCCAGCAAGCAGGAGATATGTTATCTGCTTCGCTGGTTAACATAAGCAAACAAGACTC TAAATTGAGTGACAAACTAGATCAGGACTTAGATAATATTCAGATTCAGGAAACGTACTTTGAAGATGAA GAACAAGACAATGATTGGAGTCAAGAGGATGCAAATTCCTTGTTTCTTGAAGTGGATCATTTCTCATGTT GTAATAGTGATTTGCAGGACTCTGCCCAAAATTCAAGCCCAAGCCTTAGCCAACATGCAAAGGACTCATG TTCCACAATGTCCCAGTGGCCCAATTGGGCCAGTGATGACCGCAAGTTACCACATGTGCTTTCTTCTATT GCGGAGGAAGAGCATCACCTTGAAAAGCAAAGAAGTGGCCTTCAACATGGCTTTGACAGCCAGCTCCCTG GTACTTTAGAAACTGTTAATGGAAAAAAGCAAGTCAACAGCTTTGGGGATGACGAAGAGCTGTCCACATC TTCTGACAGTGACGAGGAGGTGATCAAACAATTTGAGATTTCCGTGTCCCGGTCCCAGAGTTTCCGTTCA GTGACATCTGAGAAAGGAAAGCAGACAGGATTGGAGCAGAAACCAAAATTCAGCCGTTCGTTGTTGACAC ACGGAGAAGATGGCACAGAAGTATCTGCCTGCGAAGATTTGGATGGAGCCAGCCAACGGCGTTATTCTGA GAATCTCTCCTACGGTGAAGATGACCACATCCCTGCTCACTCACAGTCCCCATGTGAAAGAGGGGATGCC AAACACCACGGCACATCTCACCAAGAGTCCAGTGTGGTCCAAAGCCTCAGGCGCCAATCCACAGAGGGCA GCTTGGAGATGGAGACAGCTTTTAATAGCCGGGGATTTGAAGATTCCTATGCCACTGACAGCTCCTCCAT GTGGAGTCCAGAGGAACAGGACAGGACCAATTTGCAGGTGCCATCCGGGGTCTCAGAGCCCATCTCAAAG TGTGGTGACCTAGATGTCATCTTTGAATATAGAGCCGCCAGCCAGAAGCTCACAGTGACCATTGTGAGGG CACAGGGCCTCCCAGATAAGGACCGAAGTGGTGTCAACTCCTGGCAAGTTCATGTAGTGCTGCTGCCTGG TAAGAAACACAGGGGCAGGACGAACATACAGAGAGGGCCCAACCCCGTCTTCAGGGAGAAGGTCACCTTT GCCAAGCTGGAGCCCAGAGATGTGGCTGCCTGTGCTGTCCGCTTCCGCCTGTACGCTGCCCGGAAGATGA CCCGAGAGAGAATGATGGGAGAGAAACTATTCTATCTCAGCCACCTGCACCCAGAAGGGGAAATGAAAGT GACTCTGGTTCTGGAGCCAAGAAGTAATATAAGCAGTGGAGGGTCTCCGCTCAGCCCATCTGCGGTTTCT CACAGTGATAGTACTTCATCCACGCAGTCGCTGTCTCATGGAGGGGCGCCAGAGCTGTTGGTGGGGCTCT CGTACAATGCCACAACGGGGCGATTATCTGTGGAAATGATCAAAGGCAGCCATTTCCGAAACCTCGCTGT TAACCGAGCACCTGATACATATGGAAAACTCTTTCTCCTCAATTCTGTGGGTCAAGAGATGTCCCGTTGC AAGACGTCCATTCGGCGTGGTCAGCCCAATCCTGTCTATAAGGAGACCTTTGTTTTCCAGGTGGCCCTCT TTCAGCTGTCTGATGTCACGTTGATGATTTCCGTTTATAACAGGCGTACTATGAAGCGTAAAGAGATGAT TGGCTGGATTGCCCTGGGCCAGAACAGCAGTGGAGAGGAGGAACAAGATCACTGGGAGGAGATGAAGGAA ACCAAAGGCCAGCAGATCTGCAGATGGCACACTTTGCTGGAATCCTAG
Translation (645 aa): MVLAMASQDVQNFFQPFSSWISRVYEALQQAGDMLSASLVNISKQDSKLSDKLDQDLDNIQIQETYFEDE EQDNDWSQEDANSLFLEVDHFSCCNSDLQDSAQNSSPSLSQHAKDSCSTMSQWPNWASDDRKLPHVLSSI AEEEHHLEKQRSGLQHGFDSQLPGTLETVNGKKQVNSFGDDEELSTSSDSDEEVIKQFEISVSRSQSFRS VTSEKGKQTGLEQKPKFSRSLLTHGEDGTEVSACEDLDGASQRRYSENLSYGEDDHIPAHSQSPCERGDA KHHGTSHQESSVVQSLRRQSTEGSLEMETAFNSRGFEDSYATDSSSMWSPEEQDRTNLQVPSGVSEPISK CGDLDVIFEYRAASQKLTVTIVRAQGLPDKDRSGVNSWQVHVVLLPGKKHRGRTNIQRGPNPVFREKVTF AKLEPRDVAACAVRFRLYAARKMTRERMMGEKLFYLSHLHPEGEMKVTLVLEPRSNISSGGSPLSPSAVS HSDSTSSTQSLSHGGAPELLVGLSYNATTGRLSVEMIKGSHFRNLAVNRAPDTYGKLFLLNSVGQEMSRC KTSIRRGQPNPVYKETFVFQVALFQLSDVTLMISVYNRRTMKRKEMIGWIALGQNSSGEEEQDHWEEMKE TKGQQICRWHTLLES
|