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Report for CCDS78061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78061.1 Public Homo sapiens 5 JADE2 24 110 108 CCDS HistoryNCBI Gene:23338Re-query CCDS DB by CCDS ID:78061.1Re-query CCDS DB by GeneID:23338See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78061.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282605.8 ENSP00000282605.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000282605.8Link to Ensembl Protein Viewer:ENSP00000282605.4Re-query CCDS DB by Nucleotide ID:ENST00000282605Re-query CCDS DB by Protein ID:ENSP00000282605
Original member Current member EBI ENST00000512386.6 ENSP00000422991.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512386.6Link to Ensembl Protein Viewer:ENSP00000422991.2Re-query CCDS DB by Nucleotide ID:ENST00000512386Re-query CCDS DB by Protein ID:ENSP00000422991
Original member Current member EBI ENST00000681547.2 ENSP00000505514.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000681547.2Link to Ensembl Protein Viewer:ENSP00000505514.1Re-query CCDS DB by Nucleotide ID:ENST00000681547Re-query CCDS DB by Protein ID:ENSP00000505514
Original member Current member NCBI NM_001308143.2 NP_001295072.1 Accepted alive Link to Nucleotide Sequence:NM_001308143.2Link to Protein Sequence:NP_001295072.1Re-query CCDS DB by Nucleotide ID:NM_001308143Re-query CCDS DB by Protein ID:NP_001295072Link to BLAST:NP_001295072.1
Original member Current member NCBI NM_001388185.1 NP_001375114.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001388185.1Link to Protein Sequence:NP_001375114.1Re-query CCDS DB by Nucleotide ID:NM_001388185Re-query CCDS DB by Protein ID:NP_001375114Link to BLAST:NP_001375114.1
Original member Current member NCBI NM_001388186.1 NP_001375115.1 Accepted alive Link to Nucleotide Sequence:NM_001388186.1Link to Protein Sequence:NP_001375115.1Re-query CCDS DB by Nucleotide ID:NM_001388186Re-query CCDS DB by Protein ID:NP_001375115Link to BLAST:NP_001375115.1
Original member Current member NCBI NM_001388187.1 NP_001375116.1 Accepted alive Link to Nucleotide Sequence:NM_001388187.1Link to Protein Sequence:NP_001375116.1Re-query CCDS DB by Nucleotide ID:NM_001388187Re-query CCDS DB by Protein ID:NP_001375116Link to BLAST:NP_001375116.1

Chromosomal Locations for CCDS 78061.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134535858 134535915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134537989 134538083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134552052 134552209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134559830 134559990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134560746 134560957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134562200 134562367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134564494 134564610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134566116 134566580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134573645 134573762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134576768 134576896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134578494 134579317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2505 nt):
ATGGAAGAGAAGAGGCGAAAATACTCCATCAGCAGTGACAACTCTGACACCACTGACAGTCATGCGACAT
CTACATCCGCATCAAGATGCTCCAAACTGCCCAGCAGCACCAAGTCGGGCTGGCCCCGACAGAACGAAAA
GAAGCCCTCCGAGGTTTTCCGGACAGACTTGATCACAGCCATGAAGATCCCGGACTCATACCAGCTCAGC
CCGGATGACTACTACATCCTGGCAGACCCATGGCGACAGGAATGGGAGAAAGGTGTGCAGGTGCCTGCCG
GGGCAGAGGCCATCCCAGAGCCCGTGGTGAGGATCCTCCCACCACTGGAAGGCCCCCCTGCCCAGGCATC
CCCGAGCAGCACCATGCTTGGTGAGGGCTCCCAGCCTGATTGGCCAGGGGGCAGCCGCTATGACTTGGAC
GAGATTGATGCCTACTGGCTGGAGCTCATCAACTCGGAGCTTAAGGAGATGGAGAGGCCGGAGCTGGACG
AGCTGACATTAGAGCGTGTGCTGGAGGAGCTGGAGACCCTGTGCCACCAGAATATGGCCAGGGCCATTGA
GACGCAGGAGGGGCTGGGCATCGAGTACGACGAGGATGTTGTCTGCGACGTGTGTCGCTCTCCTGAGGGC
GAGGATGGCAACGAGATGGTCTTCTGTGACAAGTGCAACGTCTGTGTGCATCAGGCATGCTACGGGATCC
TCAAGGTGCCCACGGGCAGCTGGCTGTGCCGGACGTGTGCCCTGGGTGTCCAGCCAAAGTGCCTGCTCTG
CCCCAAGCGAGGAGGAGCCTTGAAGCCCACTAGAAGTGGGACCAAGTGGGTGCATGTCAGCTGTGCCCTA
TGGATTCCTGAGGTCAGCATCGGCTGCCCAGAGAAGATGGAGCCCATCACCAAGATCTCGCATATCCCAG
CCAGCCGCTGGGCTCTGTCCTGCAGCCTCTGCAAGGAATGCACAGGCACCTGCATCCAGTGTTCCATGCC
TTCCTGCGTCACAGCGTTCCATGTCACATGCGCCTTTGACCACGGCCTGGAAATGCGGACTATATTAGCA
GACAACGATGAGGTCAAGTTCAAGTCATTCTGCCAGGAGCACAGTGACGGGGGCCCACGTAATGAGCCCA
CATCTGAGCCCACGGAACCCAGCCAGGCTGGCGAGGACCTGGAAAAGGTGACCCTGCGCAAGCAGCGGCT
GCAGCAGCTAGAGGAGGACTTCTACGAGCTGGTGGAGCCGGCTGAGGTGGCTGAGCGGCTGGACCTGGCT
GAGGCACTGGTCGACTTCATCTACCAGTACTGGAAGCTGAAGAGGAAAGCCAATGCCAACCAGCCGCTGC
TGACCCCCAAGACCGACGAGGTGGACAACCTGGCCCAGCAGGAGCAGGACGTCCTCTACCGCCGCCTGAA
GCTCTTCACCCATCTGCGGCAGGACCTAGAGAGGGTTAGAAATCTGTGCTACATGGTGACAAGGCGCGAG
AGAACGAAACACGCCATCTGCAAACTCCAGGAGCAGATATTCCACCTGCAGATGAAACTTATTGAACAGG
ATCTGTGTCGAGAGCGGTCTGGGAGGAGAGCAAAGGGCAAGAAGAGTGACTCGAAGAGGAAGGGCTGCGA
GGGCTCCAAGGGCAGCACTGAGAAGAAAGAGAAAGTGAAGGCGGGGCCTGACTCAGTCCTGGGGCAGCTG
GCAGGCCTGTCCACCTCATTCCCCATCGATGGCACCTTCTTCAACAGCTGGCTGGCACAGTCGGTGCAGA
TCACAGCAGAGAACATGGCCATGAGCGAGTGGCCACTGAACAATGGGCACCGCGAGGACCCTGCTCCAGG
GCTGCTGTCAGAGGAACTGCTGCAGGACGAGGAGACACTGCTCAGCTTCATGCGGGACCCCTCGCTGCGA
CCTGGTGACCCTGCTAGGAAGGCCCGAGGCCGCACCCGCCTGCCTGCCAAGAAGAAACCACCACCACCAC
CACCGCAGGACGGGCCTGGTTCACGGACGACTCCAGACAAAGCCCCCAAGAAGACCTGGGGCCAGGATGC
AGGCAGTGGCAAGGGGGGTCAAGGGCCACCTACCAGGAAGCCACCACGTCGGACATCTTCTCACTTGCCG
TCCAGCCCTGCAGCCGGGGACTGTCCCATCCTAGCCACCCCTGAAAGCCCCCCGCCACTGGCCCCTGAGA
CCCCGGACGAGGCAGCCTCAGTAGCTGCTGACTCAGATGTCCAAGTGCCTGGCCCTGCAGCAAGCCCTAA
GCCTTTGGGCCGGCTCCGGCCACCCCGCGAGAGCAAGGTAACCCGGAGATTGCCGGGTGCCAGGCCTGAT
GCTGGGATGGGACCACCTTCAGCTGTGGCTGAGAGGCCCAAGGTCAGCCTGCATTTTGACACTGAGACTG
ATGGCTACTTCTCTGATGGGGAGATGAGCGACTCAGATGTAGAGGCCGAGGACGGTGGGGTGCAGCGGGG
TCCCCGGGAGGCAGGGGCAGAGGAGGTGGTCCGCATGGGCGTACTGGCCTCCTAA

Translation (834 aa):
MEEKRRKYSISSDNSDTTDSHATSTSASRCSKLPSSTKSGWPRQNEKKPSEVFRTDLITAMKIPDSYQLS
PDDYYILADPWRQEWEKGVQVPAGAEAIPEPVVRILPPLEGPPAQASPSSTMLGEGSQPDWPGGSRYDLD
EIDAYWLELINSELKEMERPELDELTLERVLEELETLCHQNMARAIETQEGLGIEYDEDVVCDVCRSPEG
EDGNEMVFCDKCNVCVHQACYGILKVPTGSWLCRTCALGVQPKCLLCPKRGGALKPTRSGTKWVHVSCAL
WIPEVSIGCPEKMEPITKISHIPASRWALSCSLCKECTGTCIQCSMPSCVTAFHVTCAFDHGLEMRTILA
DNDEVKFKSFCQEHSDGGPRNEPTSEPTEPSQAGEDLEKVTLRKQRLQQLEEDFYELVEPAEVAERLDLA
EALVDFIYQYWKLKRKANANQPLLTPKTDEVDNLAQQEQDVLYRRLKLFTHLRQDLERVRNLCYMVTRRE
RTKHAICKLQEQIFHLQMKLIEQDLCRERSGRRAKGKKSDSKRKGCEGSKGSTEKKEKVKAGPDSVLGQL
AGLSTSFPIDGTFFNSWLAQSVQITAENMAMSEWPLNNGHREDPAPGLLSEELLQDEETLLSFMRDPSLR
PGDPARKARGRTRLPAKKKPPPPPPQDGPGSRTTPDKAPKKTWGQDAGSGKGGQGPPTRKPPRRTSSHLP
SSPAAGDCPILATPESPPPLAPETPDEAASVAADSDVQVPGPAASPKPLGRLRPPRESKVTRRLPGARPD
AGMGPPSAVAERPKVSLHFDTETDGYFSDGEMSDSDVEAEDGGVQRGPREAGAEEVVRMGVLAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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