NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43111.1 Public Homo sapiens 3 CGGBP1 24 110 108 CCDS HistoryNCBI Gene:8545Re-query CCDS DB by CCDS ID:43111.1Re-query CCDS DB by GeneID:8545See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43111.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309534.10 ENSP00000381428.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000309534.10Link to Ensembl Protein Viewer:ENSP00000381428.2Re-query CCDS DB by Nucleotide ID:ENST00000309534Re-query CCDS DB by Protein ID:ENSP00000381428
Original member Current member EBI ENST00000398392.2 ENSP00000381429.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398392.2Link to Ensembl Protein Viewer:ENSP00000381429.2Re-query CCDS DB by Nucleotide ID:ENST00000398392Re-query CCDS DB by Protein ID:ENSP00000381429
Original member Current member EBI ENST00000462901.5 ENSP00000418769.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000462901.5Link to Ensembl Protein Viewer:ENSP00000418769.1Re-query CCDS DB by Nucleotide ID:ENST00000462901Re-query CCDS DB by Protein ID:ENSP00000418769
Original member Current member EBI ENST00000482016.6 ENSP00000420374.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000482016.6Link to Ensembl Protein Viewer:ENSP00000420374.1Re-query CCDS DB by Nucleotide ID:ENST00000482016Re-query CCDS DB by Protein ID:ENSP00000420374
Original member Current member EBI ENST00000675130.1 ENSP00000502581.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675130.1Link to Ensembl Protein Viewer:ENSP00000502581.1Re-query CCDS DB by Nucleotide ID:ENST00000675130Re-query CCDS DB by Protein ID:ENSP00000502581
Original member Current member NCBI NM_001008390.2 NP_001008391.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008390.2Link to Protein Sequence:NP_001008391.1Re-query CCDS DB by Nucleotide ID:NM_001008390Re-query CCDS DB by Protein ID:NP_001008391Link to BLAST:NP_001008391.1
Original member Current member NCBI NM_001195308.2 NP_001182237.1 Accepted alive Link to Nucleotide Sequence:NM_001195308.2Link to Protein Sequence:NP_001182237.1Re-query CCDS DB by Nucleotide ID:NM_001195308Re-query CCDS DB by Protein ID:NP_001182237Link to BLAST:NP_001182237.1
Original member Current member NCBI NM_003663.4 NP_003654.3 Accepted alive Link to Nucleotide Sequence:NM_003663.4Link to Protein Sequence:NP_003654.3Re-query CCDS DB by Nucleotide ID:NM_003663Re-query CCDS DB by Protein ID:NP_003654Link to BLAST:NP_003654.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008391.1 167 Q9UFW8 167 100% 0 0
NP_001182237.1 167 Q9UFW8 167 100% 0 0
NP_003654.3 167 Q9UFW8 167 100% 0 0

Chromosomal Locations for CCDS 43111.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88055473 88055976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGGAGCGATTTGTAGTAACAGCACCACCTGCTCGAAACCGTTCTAAGACTGCTTTGTATGTGACTCCCC
TGGATCGAGTCACTGAGTTTGGAGGTGAGCTGCATGAAGATGGAGGAAAACTCTTCTGCACTTCTTGCAA
TGTGGTTCTGAATCATGTTCGCAAGTCTGCCATTAGTGACCACCTCAAGTCAAAGACTCATACCAAGAGG
AAGGCAGAATTTGAAGAGCAGAATGTGAGAAAGAAGCAGAGGCCCCTAACTGCATCTCTTCAGTGCAACA
GTACTGCGCAAACAGAGAAAGTCAGTGTTATCCAGGACTTTGTGAAAATGTGCCTGGAAGCCAACATCCC
ACTTGAGAAGGCTGATCACCCAGCAGTCCGTGCTTTCCTATCTCGCCATGTGAAGAATGGAGGCTCCATA
CCTAAGTCAGACCAGCTACGGAGGGCATATCTTCCTGATGGATATGAGAATGAGAATCAACTCCTCAACT
CACAAGATTGTTGA

Translation (167 aa):
MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISDHLKSKTHTKR
KAEFEEQNVRKKQRPLTASLQCNSTAQTEKVSVIQDFVKMCLEANIPLEKADHPAVRAFLSRHVKNGGSI
PKSDQLRRAYLPDGYENENQLLNSQDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH