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Report for CCDS647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
647.1 Public Homo sapiens 1 SRSF11 24 110 108 CCDS HistoryNCBI Gene:9295Re-query CCDS DB by CCDS ID:647.1Re-query CCDS DB by GeneID:9295See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 647.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370949.2 ENSP00000359987.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370949.2Link to Ensembl Protein Viewer:ENSP00000359987.2Re-query CCDS DB by Nucleotide ID:ENST00000370949Re-query CCDS DB by Protein ID:ENSP00000359987
Original member Current member EBI ENST00000370950.7 ENSP00000359988.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370950.7Link to Ensembl Protein Viewer:ENSP00000359988.3Re-query CCDS DB by Nucleotide ID:ENST00000370950Re-query CCDS DB by Protein ID:ENSP00000359988
Original member Current member NCBI NM_001350605.2 NP_001337534.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001350605.2Link to Protein Sequence:NP_001337534.1Re-query CCDS DB by Nucleotide ID:NM_001350605Re-query CCDS DB by Protein ID:NP_001337534Link to BLAST:NP_001337534.1
Original member Current member NCBI NM_001350606.2 NP_001337535.1 Accepted alive Link to Nucleotide Sequence:NM_001350606.2Link to Protein Sequence:NP_001337535.1Re-query CCDS DB by Nucleotide ID:NM_001350606Re-query CCDS DB by Protein ID:NP_001337535Link to BLAST:NP_001337535.1
Original member Current member NCBI NM_001394406.1 NP_001381335.1 Accepted alive Link to Nucleotide Sequence:NM_001394406.1Link to Protein Sequence:NP_001381335.1Re-query CCDS DB by Nucleotide ID:NM_001394406Re-query CCDS DB by Protein ID:NP_001381335Link to BLAST:NP_001381335.1
Original member Current member NCBI NM_004768.5 NP_004759.1 Accepted alive Link to Nucleotide Sequence:NM_004768.5Link to Protein Sequence:NP_004759.1Re-query CCDS DB by Nucleotide ID:NM_004768Re-query CCDS DB by Protein ID:NP_004759Link to BLAST:NP_004759.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001337534.1 484 Q05519-1 484 100% 0 0
NP_001337535.1 484 Q05519-1 484 100% 0 0
NP_001381335.1 484 Q05519-1 484 100% 0 0
NP_004759.1 484 Q05519-1 484 100% 0 0

Chromosomal Locations for CCDS 647.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 70221637 70221839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70228422 70228555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70232268 70232377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70234696 70234788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70235501 70235550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70237425 70237552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70239439 70239520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70244684 70244815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70246818 70246907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70249952 70250047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70250365 70250503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70250608 70250805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGAGCAACACTACCGTCGTCCCCAGCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGCGGAGGTG
GTGGTGGCGGCGGAGGCGGCGGCACCGAGGTAATCCAGGTGACTAATGTCTCCCCGAGCGCTAGCTCTGA
GCAGATGCGGACTCTCTTCGGTTTCCTAGGCAAGATCGACGAACTGCGCCTCTTCCCGCCGGATGATTCG
CCTTTGCCAGTCTCATCTCGTGTCTGCTTTGTTAAGTTCCATGATCCAGACTCAGCAGTTGTGGCACAGC
ATCTGACAAACACTGTATTCGTTGACAGAGCTTTGATAGTCGTACCATATGCAGAAGGAGTTATTCCTGA
TGAAGCTAAAGCTTTGTCTCTGTTGGCACCAGCTAATGCAGTGGCAGGTCTTCTGCCTGGTGGTGGACTC
CTGCCTACTCCTAACCCACTTACCCAGATTGGCGCTGTTCCACTGGCTGCTTTGGGGGCTCCTACTCTTG
ATCCTGCCCTTGCTGCACTTGGGCTTCCTGGAGCAAACTTGAACTCTCAGTCTCTTGCTGCAGATCAGTT
GCTGAAGCTTATGAGTACTGTTGATCCCAAGTTGAATCATGTAGCTGCTGGTCTCGTTTCACCAAGTCTG
AAATCGGATACCTCTAGTAAAGAAATAGAGGAAGCTATGAAAAGAGTACGAGAAGCACAGTCCCTAATTT
CTGCTGCTATAGAACCAGATAAGAAAGAAGAAAAAAGAAGGCATTCAAGATCAAGATCACGTTCTAGGAG
GAGGAGGACTCCCTCATCTTCTAGACACAGGCGGTCAAGAAGCAGATCGAGACGGCGGTCACATTCTAAG
TCTAGGAGTCGGCGACGATCCAAAAGCCCAAGGCGGAGAAGATCTCATTCCAGAGAAAGAGGTAGAAGGT
CAAGGAGCACATCAAAAACAAGAGACAAAAAGAAAGAAGACAAAGAAAAGAAACGTTCTAAAACACCACC
AAAAAGTTACAGCACAGCCAGACGTTCTAGAAGTGCAAGCAGAGAGAGACGACGACGAAGAAGCAGGAGT
GGCACAAGATCTCCTAAAAAGCCTCGGTCTCCTAAAAGAAAATTGTCCCGCTCACCATCCCCTAGGAGAC
ATAAAAAGGAGAAGAAGAAAGATAAAGACAAAGAAAGAAGTAGGGATGAAAGAGAACGATCAACAAGCAA
GAAGAAGAAGAGTAAAGATAAGGAAAAGGACCGGGAAAGAAAATCAGAGAGTGATAAAGATGTAAAACAG
GTTACACGGGATTATGATGAAGAGGAACAGGGGTATGACAGTGAGAAAGAGAAAAAAGAAGAGAAGAAAC
CAATAGAAACAGGTTCCCCTAAAACAAAGGAATGTTCTGTGGAAAAGGGAACTGGTGATTCACTAAGAGA
ATCCAAAGTGAATGGGGATGATCATCATGAAGAAGACATGGATATGAGTGACTGA

Translation (484 aa):
MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDS
PLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGLLPGGGL
LPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSL
KSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSK
SRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRS
GTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKQ
VTRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGDSLRESKVNGDDHHEEDMDMSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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