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Report for CCDS4635.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4635.1 Public Homo sapiens 6 H1-5 24 110 108 CCDS HistoryNCBI Gene:3009Re-query CCDS DB by CCDS ID:4635.1Re-query CCDS DB by GeneID:3009See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4635.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331442.5 ENSP00000330074.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331442.5Link to Ensembl Protein Viewer:ENSP00000330074.4Re-query CCDS DB by Nucleotide ID:ENST00000331442Re-query CCDS DB by Protein ID:ENSP00000330074
Original member Current member NCBI NM_005322.3 NP_005313.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005322.3Link to Protein Sequence:NP_005313.1Re-query CCDS DB by Nucleotide ID:NM_005322Re-query CCDS DB by Protein ID:NP_005313Link to BLAST:NP_005313.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005313.1 226 P16401 226 100% 0 0

Chromosomal Locations for CCDS 4635.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 27866849 27867529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGTCGGAAACCGCTCCTGCCGAGACAGCCACCCCAGCGCCGGTGGAGAAATCCCCGGCTAAGAAGAAGG
CAACTAAGAAGGCTGCCGGCGCCGGCGCTGCTAAGCGCAAAGCGACGGGGCCCCCAGTCTCAGAGCTGAT
CACCAAGGCTGTGGCTGCTTCTAAGGAGCGCAATGGCCTTTCTTTGGCAGCCCTTAAGAAGGCCTTAGCG
GCCGGTGGCTACGACGTGGAGAAGAATAACAGCCGCATTAAGCTGGGCCTCAAGAGCTTGGTGAGCAAGG
GCACCCTGGTGCAGACCAAGGGCACTGGTGCTTCTGGCTCCTTTAAACTCAACAAGAAGGCGGCCTCCGG
GGAAGCCAAGCCCAAAGCCAAGAAGGCAGGCGCCGCTAAAGCTAAGAAGCCCGCGGGGGCCACGCCTAAG
AAGGCCAAGAAGGCTGCAGGGGCGAAAAAGGCAGTGAAGAAGACTCCGAAGAAGGCGAAGAAGCCCGCGG
CGGCTGGCGTCAAAAAGGTGGCGAAGAGCCCTAAGAAGGCCAAGGCCGCTGCCAAACCGAAAAAGGCAAC
CAAGAGTCCTGCCAAGCCCAAGGCAGTTAAGCCGAAGGCGGCAAAGCCCAAAGCCGCTAAGCCCAAAGCA
GCAAAACCTAAAGCTGCAAAGGCCAAGAAGGCGGCTGCCAAAAAGAAGTAG

Translation (226 aa):
MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGLSLAALKKALA
AGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKAKKAGAAKAKKPAGATPK
KAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAKAAAKPKKATKSPAKPKAVKPKAAKPKAAKPKA
AKPKAAKAKKAAAKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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