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Report for CCDS11278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11278.1 Public Homo sapiens 17 CCL7 24 110 108 CCDS HistoryNCBI Gene:6354Re-query CCDS DB by CCDS ID:11278.1Re-query CCDS DB by GeneID:6354See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 11278.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378569.2 ENSP00000367832.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378569.2Link to Ensembl Protein Viewer:ENSP00000367832.2Re-query CCDS DB by Nucleotide ID:ENST00000378569Re-query CCDS DB by Protein ID:ENSP00000367832
Original member Current member NCBI NM_006273.4 NP_006264.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006273.4Link to Protein Sequence:NP_006264.2Re-query CCDS DB by Nucleotide ID:NM_006273Re-query CCDS DB by Protein ID:NP_006264Link to BLAST:NP_006264.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006264.2 99 P80098 99 100% 0 0

Chromosomal Locations for CCDS 11278.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34270291 34270366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34271146 34271263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34271697 34271802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGAAAGCCTCTGCAGCACTTCTGTGTCTGCTGCTCACAGCAGCTGCTTTCAGCCCCCAGGGGCTTGCTC
AGCCAGTTGGGATTAATACTTCAACTACCTGCTGCTACAGATTTATCAATAAGAAAATCCCTAAGCAGAG
GCTGGAGAGCTACAGAAGGACCACCAGTAGCCACTGTCCCCGGGAAGCTGTAATCTTCAAGACCAAACTG
GACAAGGAGATCTGTGCTGACCCCACACAGAAGTGGGTCCAGGACTTTATGAAGCACCTGGACAAGAAAA
CCCAAACTCCAAAGCTTTGA

Translation (99 aa):
MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLESYRRTTSSHCPREAVIFKTKL
DKEICADPTQKWVQDFMKHLDKKTQTPKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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