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Report for CCDS12361.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12361.1 Public Homo sapiens 19 PGLS 24 110 108 CCDS HistoryNCBI Gene:25796Re-query CCDS DB by CCDS ID:12361.1Re-query CCDS DB by GeneID:25796See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12361.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252603.7 ENSP00000252603.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252603.7Link to Ensembl Protein Viewer:ENSP00000252603.1Re-query CCDS DB by Nucleotide ID:ENST00000252603Re-query CCDS DB by Protein ID:ENSP00000252603
Original member Current member NCBI NM_012088.3 NP_036220.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012088.3Link to Protein Sequence:NP_036220.1Re-query CCDS DB by Nucleotide ID:NM_012088Re-query CCDS DB by Protein ID:NP_036220Link to BLAST:NP_036220.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036220.1 258 O95336 258 100% 0 0

Chromosomal Locations for CCDS 12361.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 17511673 17511960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17516173 17516280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17517288 17517389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17517710 17517850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17520944 17521081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGGCCGCGCCGGCCCCGGGCCTCATCTCGGTGTTCTCGAGTTCCCAGGAGCTGGGTGCGGCGCTAGCGC
AGCTGGTGGCCCAGCGCGCAGCATGCTGCCTGGCAGGGGCCCGCGCCCGTTTCGCGCTCGGCCTGTCGGG
CGGGAGCCTCGTCTCGATGCTAGCCCGCGAGCTACCCGCCGCCGTCGCCCCTGCCGGGCCAGCTAGCTTA
GCGCGCTGGACGCTGGGCTTCTGCGACGAGCGCCTCGTGCCCTTCGATCACGCCGAGAGCACGTACGGCC
TCTACCGGACGCATCTTCTCTCCAGACTGCCGATCCCAGAAAGCCAGGTGATCACCATTAACCCCGAGCT
GCCTGTGGAGGAGGCGGCTGAGGACTACGCCAAGAAGCTGAGACAGGCATTCCAAGGGGACTCCATCCCG
GTTTTCGACCTGCTGATCCTGGGGGTGGGCCCCGATGGTCACACCTGCTCACTCTTCCCAGACCACCCCC
TCCTACAGGAGCGGGAGAAGATTGTGGCTCCCATCAGTGACTCCCCGAAGCCACCGCCACAGCGTGTGAC
CCTCACACTACCTGTCCTGAATGCAGCACGAACTGTCATCTTTGTGGCAACTGGAGAAGGCAAGGCAGCT
GTTCTGAAGCGCATTTTGGAGGACCAGGAGGAAAACCCGCTGCCCGCCGCCCTGGTCCAGCCCCACACCG
GGAAACTGTGCTGGTTCTTGGACGAGGCGGCCGCCCGCCTCCTGACCGTGCCCTTCGAGAAGCATTCCAC
TTTGTAG

Translation (258 aa):
MAAPAPGLISVFSSSQELGAALAQLVAQRAACCLAGARARFALGLSGGSLVSMLARELPAAVAPAGPASL
ARWTLGFCDERLVPFDHAESTYGLYRTHLLSRLPIPESQVITINPELPVEEAAEDYAKKLRQAFQGDSIP
VFDLLILGVGPDGHTCSLFPDHPLLQEREKIVAPISDSPKPPPQRVTLTLPVLNAARTVIFVATGEGKAA
VLKRILEDQEENPLPAALVQPHTGKLCWFLDEAAARLLTVPFEKHSTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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