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Report for CCDS12717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12717.1 Public Homo sapiens 19 SYNGR4 24 110 108 CCDS HistoryNCBI Gene:23546Re-query CCDS DB by CCDS ID:12717.1Re-query CCDS DB by GeneID:23546See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12717.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344846.7 ENSP00000344041.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344846.7Link to Ensembl Protein Viewer:ENSP00000344041.1Re-query CCDS DB by Nucleotide ID:ENST00000344846Re-query CCDS DB by Protein ID:ENSP00000344041
Original member Current member NCBI NM_012451.4 NP_036583.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012451.4Link to Protein Sequence:NP_036583.2Re-query CCDS DB by Nucleotide ID:NM_012451Re-query CCDS DB by Protein ID:NP_036583Link to BLAST:NP_036583.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036583.2 234 O95473 234 100% 0 0

Chromosomal Locations for CCDS 12717.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 48365843 48365935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48373517 48373754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48375613 48375752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48376085 48376318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGCACATCCCCAAAAGCCTCCAGGAGCTGGCCAACAGCGAAGCCGTGCAGTTTCTGAGAAGGCCCAAGA
CCATCACGCGGGTCTTCGAAGGGGTCTTCTCCCTGATCGTCTTCTCCTCCCTGCTGACCGACGGCTACCA
GAACAAGATGGAGTCTCCGCAGCTCCACTGCATTCTCAACAGCAACAGCGTGGCCTGCAGCTTTGCCGTG
GGAGCCGGCTTCCTGGCCTTCCTCAGCTGCCTGGCCTTCCTCGTCCTGGACACACAGGAGACCCGCATTG
CCGGCACCCGCTTCAAGACAGCCTTCCAGCTCCTGGACTTCATCCTGGCTGTTCTCTGGGCAGTTGTCTG
GTTCATGGGTTTCTGCTTCCTGGCCAACCAATGGCAGCATTCGCCGCCCAAAGAGTTCCTCCTGGGGAGC
AGCAGTGCCCAGGCAGCCATCGCCTTCACCTTCTTCTCCATCCTTGTCTGGATATTCCAGGCCTACCTGG
CATTCCAGGACCTCCGAAATGATGCTCCAGTCCCTTACAAGCGCTTCCTGGATGAGGGTGGCATGGTGCT
GACCACCCTCCCCTTGCCCTCTGCCAACAGCCCTGTGAACATGCCCACCACTGGCCCCAACAGCCTGAGT
TATGCTAGCTCTGCCCTGTCCCCCTGTCTGACCGCTCCAAAGTCCCCCCGGCTTGCTATGATGCCTGACA
ACTAA

Translation (234 aa):
MHIPKSLQELANSEAVQFLRRPKTITRVFEGVFSLIVFSSLLTDGYQNKMESPQLHCILNSNSVACSFAV
GAGFLAFLSCLAFLVLDTQETRIAGTRFKTAFQLLDFILAVLWAVVWFMGFCFLANQWQHSPPKEFLLGS
SSAQAAIAFTFFSILVWIFQAYLAFQDLRNDAPVPYKRFLDEGGMVLTTLPLPSANSPVNMPTTGPNSLS
YASSALSPCLTAPKSPRLAMMPDN


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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