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Report for CCDS43038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43038.1 Public Homo sapiens 22 NCAPH2 24 110 108 CCDS HistoryNCBI Gene:29781Re-query CCDS DB by CCDS ID:43038.1Re-query CCDS DB by GeneID:29781See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43038.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395698.7 ENSP00000379050.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395698.7Link to Ensembl Protein Viewer:ENSP00000379050.3Re-query CCDS DB by Nucleotide ID:ENST00000395698Re-query CCDS DB by Protein ID:ENSP00000379050
Original member Current member NCBI NM_014551.5 NP_055366.3 Accepted alive Link to Nucleotide Sequence:NM_014551.5Link to Protein Sequence:NP_055366.3Re-query CCDS DB by Nucleotide ID:NM_014551Re-query CCDS DB by Protein ID:NP_055366Link to BLAST:NP_055366.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055366.3 299 Q6IBW4-5 299 100% 0 0

Chromosomal Locations for CCDS 43038.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 50508338 50508445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50516447 50516548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50517427 50517482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50517577 50517661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50517741 50517809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50517973 50518052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50518133 50518278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50518649 50518732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50519190 50519359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGGAGGACGTGGAGGCGCGCTTCGCCCACCTCTTGCAGCCCATCCGCGACCTCACCAAGAACTGGGAGG
TGGACGTGGCGGCCCAGCTGGGCGAGTATCTGGAGGAGCTGGATCAGATCTGCATTTCTTTTGACGAAGG
CAAGACCACAATGAACTTCATTGAGGCAGCGTTGTTGATCCAGGGCTCTGCCTGCGTCTACAGTAAGAAG
GTGGAATACCTCTACTCACTCGTCTACCAGGCCCTTGATTTCATCTCTGGAAAGAGGCGGGCCAAGCAGC
TCTCTTCGGTGCAGGAGGACAGGGCCAATGGGGTTGCCAGCTCCGGGGTCCCCCAGGAGGCAGAGAATGA
GTTCCTGTCGCTGGATGACTTCCCTGACTCCCGGACTAACGTGGATCTCAAGAATGATCAGACGCCCAGT
GAGGTCCTCATCATCCCCCTCCTGCCCATGGCCCTGGTGGCCCCTGATGAAATGGAGAAGAACAACAATC
CCCTGTACAGCCGTCAGGGTGAGGTCCTGGCCAGCCGGAAGGATTTCAGGATGAACACGTGCGTTCCCCA
CCCCAGAGGGGCCTTCATGTTGGAGCCAGAGGGCATGTCCCCCATGGAACCAGCGGGCGTTTCCCCCATG
CCAGGGACCCAGAAGGACACCGGGAGGACTGAGGAGCAGCCAATGGAAGTTTCCGTGTGCAGGAGCCCTG
TCCCAGCACTCGGCTTCTCCCAGGAGCCAGGCCCCTCTCCAGAAGGCCCGATGCCCCTGGGTGGGGGCGA
GGACGAGGATGCAGAGGAGGCAGTAGAGCTTCCTGAGGCCTCGGCCCCCAAGGCCGCTCTGGAGCCCAAG
GAGTCCAGGAGCCCGCAGCAGGTGGGACCCACATGGAGGCCTGCAGAACCTGAGCTGTGA

Translation (299 aa):
MEDVEARFAHLLQPIRDLTKNWEVDVAAQLGEYLEELDQICISFDEGKTTMNFIEAALLIQGSACVYSKK
VEYLYSLVYQALDFISGKRRAKQLSSVQEDRANGVASSGVPQEAENEFLSLDDFPDSRTNVDLKNDQTPS
EVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRKDFRMNTCVPHPRGAFMLEPEGMSPMEPAGVSPM
PGTQKDTGRTEEQPMEVSVCRSPVPALGFSQEPGPSPEGPMPLGGGEDEDAEEAVELPEASAPKAALEPK
ESRSPQQVGPTWRPAEPEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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