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Report for CCDS13421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13421.1 Public Homo sapiens 20 SLC9A8 24 110 108 CCDS HistoryNCBI Gene:23315Re-query CCDS DB by CCDS ID:13421.1Re-query CCDS DB by GeneID:23315See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13421.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361573.3 ENSP00000354966.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361573.3Link to Ensembl Protein Viewer:ENSP00000354966.2Re-query CCDS DB by Nucleotide ID:ENST00000361573Re-query CCDS DB by Protein ID:ENSP00000354966
Original member Current member NCBI NM_015266.3 NP_056081.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015266.3Link to Protein Sequence:NP_056081.1Re-query CCDS DB by Nucleotide ID:NM_015266Re-query CCDS DB by Protein ID:NP_056081Link to BLAST:NP_056081.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056081.1 581 Q9Y2E8-1 581 100% 0 0

Chromosomal Locations for CCDS 13421.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 49812923 49812948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49815008 49815189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49823061 49823141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49839541 49839599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49845036 49845119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49849579 49849680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49850810 49850844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49855438 49855581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49862929 49863067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49864739 49864844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49874705 49874821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49877981 49878063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49880924 49881035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49883846 49884066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49886752 49886898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49887829 49887936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGGGGGAGAAGATGGCGGAAGAGGAGAGGTTCCCCAATACAACTCATGAGGGTTTCAATGTCACCCTCC
ACACCACCCTGGTTGTCACGACGAAACTGGTGCTCCCGACCCCTGGCAAGCCCATCCTCCCCGTGCAGAC
AGGGGAGCAGGCCCAGCAAGAGGAGCAGTCCAGCGGCATGACCATTTTCTTCAGCCTCCTTGTCCTAGCT
ATCTGCATCATATTGGTGCATTTACTGATCCGATACAGATTACATTTCTTGCCAGAGAGTGTTGCTGTTG
TTTCTTTAGGTATTCTCATGGGAGCAGTTATAAAAATTATAGAGTTTAAAAAACTGGCGAATTGGAAGGA
AGAAGAAATGTTTCGTCCAAACATGTTTTTCCTCCTCCTGCTTCCCCCTATTATCTTTGAGTCTGGATAT
TCATTACACAAGGGTAACTTCTTTCAAAATATTGGTTCCATCACCCTGTTTGCTGTTTTTGGGACGGCAA
TCTCCGCTTTTGTAGTAGGTGGAGGAATTTATTTTCTGGGTCAGGCTGATGTAATCTCTAAACTCAACAT
GACAGACAGTTTTGCGTTTGGCTCCCTAATATCTGCTGTCGATCCAGTGGCCACTATTGCCATTTTCAAT
GCACTTCATGTGGACCCCGTGCTCAACATGCTGGTCTTTGGAGAAAGTATTCTCAACGATGCAGTCTCCA
TTGTTCTGACCAACACAGCTGAAGGTTTAACAAGAAAAAATATGTCAGATGTCAGTGGGTGGCAAACATT
TTTACAAGCCCTTGACTACTTCCTCAAAATGTTCTTTGGCTCTGCAGCGCTCGGCACTCTCACTGGCTTA
ATTTCTGCATTAGTGCTGAAGCATATTGACTTGAGGAAAACGCCTTCCTTGGAGTTTGGCATGATGATCA
TTTTTGCTTATCTGCCTTATGGGCTTGCAGAAGGAATCTCACTCTCAGGCATCATGGCCATCCTTTTCTC
AGGCATCGTGATGTCCCACTACACGCACCATAACCTCTCCCCAGTCACCCAGATCCTCATGCAGCAGACC
CTCCGCACCGTGGCCTTCTTATGTGAAACATGTGTGTTTGCATTTCTTGGCCTGTCCATTTTTAGTTTTC
CTCACAAGTTTGAAATTTCCTTTGTCATCTGGTGCATAGTGCTTGTACTATTTGGCAGAGCGGTAAACAT
TTTCCCTCTTTCCTACCTCCTGAATTTCTTCCGGGATCATAAAATCACACCGAAGATGATGTTCATCATG
TGGTTTAGTGGCCTGCGGGGAGCCATCCCCTATGCCCTGAGCCTACACCTGGACCTGGAGCCCATGGAGA
AGCGGCAGCTCATCGGCACCACCACCATCGTCATCGTGCTCTTCACCATCCTGCTGCTGGGCGGCAGCAC
CATGCCCCTCATTCGCCTCATGGACATCGAGGACGCCAAGGCACACCGCAGGAACAAGAAGGACGTCAAC
CTCAGCAAGACTGAGAAGATGGGCAACACTGTGGAGTCGGAGCACCTGTCGGAGCTCACGGAGGAGGAGT
ACGAGGCCCACTACATCAGGCGGCAGGACCTTAAGGGCTTCGTGTGGCTGGACGCCAAGTACCTGAACCC
CTTCTTCACTCGGAGGCTGACGCAGGAGGACCTGCACCACGGGCGCATCCAGATGAAAACTCTCACCAAC
AAGTGGTACGAGGAGGTACGCCAGGGCCCCTCCGGCTCCGAGGACGACGAGCAGGAGCTGCTCTGA

Translation (581 aa):
MGEKMAEEERFPNTTHEGFNVTLHTTLVVTTKLVLPTPGKPILPVQTGEQAQQEEQSSGMTIFFSLLVLA
ICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKIIEFKKLANWKEEEMFRPNMFFLLLLPPIIFESGY
SLHKGNFFQNIGSITLFAVFGTAISAFVVGGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFN
ALHVDPVLNMLVFGESILNDAVSIVLTNTAEGLTRKNMSDVSGWQTFLQALDYFLKMFFGSAALGTLTGL
ISALVLKHIDLRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQT
LRTVAFLCETCVFAFLGLSIFSFPHKFEISFVIWCIVLVLFGRAVNIFPLSYLLNFFRDHKITPKMMFIM
WFSGLRGAIPYALSLHLDLEPMEKRQLIGTTTIVIVLFTILLLGGSTMPLIRLMDIEDAKAHRRNKKDVN
LSKTEKMGNTVESEHLSELTEEEYEAHYIRRQDLKGFVWLDAKYLNPFFTRRLTQEDLHHGRIQMKTLTN
KWYEEVRQGPSGSEDDEQELL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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