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Report for CCDS33527.3 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
33527.3 |
Public |
Homo sapiens |
21 |
LTN1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:26046](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:33527.3](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:26046](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 21 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 33527.2 |
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation. |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 33527.3
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000361371.10 |
ENSP00000354977.4 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000361371.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000354977.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000361371](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000354977](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000389194.7 |
ENSP00000373846.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000389194.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000373846.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000389194](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000373846](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_015565.3 |
NP_056380.3 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_015565.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_056380.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_015565](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_056380](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_056380.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_056380.3 |
1766 |
O94822-1 |
1766 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 33527.3
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5301 nt): ATGGGCGGGAAGAACAAGCAGCGAACTAAAGGGAACCTGAGGCCTTCAAACAGTGGCCGAGCTGCAGAAC TCCTTGCCAAAGAACAGGGAACAGTGCCTGGATTTATTGGTTTTGGAACATCTCAGAGTGACCTAGGCTA TGTTCCTGCTATTCAAGGAGCTGAAGAAATTGACAGTCTTGTAGATTCTGATTTCCGAATGGTGCTGCGG AAACTTTCAAAGAAAGATGTCACCACAAAATTAAAAGCTATGCAGGAATTTGGAACCATGTGTACAGAGA GAGACACAGAAACTGTGAAAGGAGTTCTTCCATATTGGCCAAGAATTTTTTGCAAAATTTCACTTGATCA TGACCGTCGCGTCCGAGAAGCCACACAACAAGCTTTTGAAAAACTTATCCTTAAAGTAAAGAAACAGTTG GCTCCCTACTTAAAAAGTTTAATGGGATATTGGCTAATGGCTCAGTGTGATACTTACACACCAGCTGCGT TTGCAGCAAAAGATGCATTTGAAGCGGCTTTTCCTCCAAGCAAGCAACCTGAAGCCATAGCATTTTGTAA GGATGAAATTACAAGTGTGCTGCAGGATCATCTTATAAAAGAAACACCTGATACACTCAGTGACCCGCAA ACTGTTCCAGAGGAAGAAAGAGAAGCTAAATTCTACCGGGTTGTAACTTGTTCCTTATTGGCATTAAAGA GATTACTTTGCCTTTTACCTGATAATGAGCTTGATTCTCTGGAGGAGAAATTTAAGTCTCTTTTATCACA GAATAAGTTTTGGAAGTATGGAAAACACAGTGTACCTCAGATTCGCTCAGCTTATTTTGAGTTAGTCTCT GCATTGTGCCAGCGCATTCCACAGTTGATGAAAGAGGAAGCATCCAAAGTGAGCCCATCAGTTCTACTTA GCATTGATGACAGTGACCCAATTGTCTGCCCAGCTCTCTGGGAAGCTGTACTCTATACACTTACAACTAT TGAGGACTGTTGGCTTCATGTAAATGCAAAAAAGAGTGTGTTTCCCAAGCTATCAACTGTGATTCGTGAA GGTGGTCGGGGTCTAGCTACTGTCATATATCCTTACCTTCTGCCATTCATCAGCAAGCTCCCTCAGTCCA TCACAAATCCAAAGTTGGATTTCTTCAAAAATTTCCTCACGTCTCTAGTTGCTGGGCTGTCAACAGAGAG AACTAAAACCAGCTCTTTAGAGTCCTCGGCAGTAATATCTGCTTTTTTTGAATGCTTACGTTTTATAATG CAGCAAAACTTAGGTGAGGAAGAGATTGAACAGATGCTCGTCAATGATCAGTTGATCCCTTTTATTGATG CAGTTCTCAAAGACCCAGGATTGCAACATGGGCAGCTATTTAACCATTTAGCAGAAACTCTAAGTTCCTG GGAAGCCAAAGCAGACACGGAAAAAGATGAAAAAACAGCTCACAACTTGGAGAACGTACTGATACATTTC TGGGAAAGACTGTCAGAGATCTGTGTTGCGAAAATCAGTGAGCCAGAAGCTGATGTTGAGTCCGTTTTGG GTGTATCTAACCTATTACAGGTGCTTCAGAAGCCGAAGAGCTCATTGAAGTCAAGTAAAAAAAAAAATGG TAAGGTTAGATTTGCTGATGAGATACTTGAAAGCAATAAAGAGAATGAAAAATGTGTATCTTCAGAAGGA GAGAAGATTGAAGGCTGGGAATTAACAACTGAACCTTCTCTCACTCATAATTCTTCAGGCCTTTTGTCTC CTCTAAGGAAAAAACCTTTGGAAGACTTAGTCTGTAAACTCGCAGATATAAGTATTAATTATGTCAATGA ACGAAAGTCAGAGCAACATCTAAGGTTTCTTTCTACTCTGCTTGACTCCTTTTCTTCAAGCCGAGTATTT AAAATGCTACTTGGTGATGAAAAACAGAGTATTGTCCAAGCCAAACCTCTTGAAATAGCCAAGCTTGTAC AAAAAAATCCTGCGGTGCAGTTTTTATACCAGAAACTGATAGGTTGGCTAAATGAAGATCAAAGGAAGGA TTTTGGTTTCCTGGTGGACATTTTGTACAGTGCTCTCCGGTGCTGTGACAATGATATGGAAAGAAAAAAA GTCTTGGATGATCTAACCAAGGTGGACTTGAAATGGAATTCTCTTCTTAAGATTATTGAAAAGGCATGTC CTAGTTCAGATAAACATGCTTTAGTAACTCCTTGGCTCAAAGGCGATATCCTTGGTGAGAAATTGGTCAA CTTGGCAGATTGTCTTTGTAATGAGGACTTGGAATCCAGGGTATCTTCAGAATCTCACTTCTCAGAAAGA TGGACTCTTCTAAGCTTGGTATTATCCCAACATGTTAAAAATGATTACTTGATTGGAGACGTATATGTTG AAAGAATCATTGTTAGACTTCATGAAACTTTATTCAAAACAAAGAAATTATCAGAAGCTGAAAGCAGTGA CTCATCAGTGTCTTTTATCTGTGATGTGGCCTATAACTATTTCAGCTCAGCGAAAGGATGCTTGCTAATG CCATCATCTGAAGATTTATTATTAACTCTCTTTCAGTTATGTGCTCAGAGCAAAGAAAAAACACATTTGC CAGATTTTCTTATCTGTAAACTGAAAAATACTTGGCTCTCTGGTGTAAATTTATTGGTTCATCAAACTGA CAGTTCATATAAAGAGAGTACCTTCCTACATTTGTCTGCTCTGTGGCTGAAGAACCAAGTTCAGGCTTCA TCTTTGGATATCAACAGTCTCCAAGTCCTCTTGTCTGCTGTTGATGATTTGCTAAATACACTTCTAGAGA GTGAAGATTCTTATCTTATGGGAGTTTATATTGGAAGTGTAATGCCGAACGACAGTGAATGGGAAAAGAT GAGGCAGTCTCTTCCTATGCAGTGGTTACATAGACCTCTTTTAGAGGGAAGATTGAGTTTGAATTATGAA TGTTTCAAAACAGATTTTAAGGAACAGGACATAAAGACACTTCCCAGCCATTTGTGTACTTCAGCATTAT TGAGCAAAATGGTCTTAATTGCACTGAGAAAGGAAACAGTCTTAGAAAATAATGAGCTTGAGAAAATAAT TGCAGAACTGCTTTATTCACTGCAGTGGTGTGAAGAATTAGATAACCCACCTATTTTTCTAATTGGATTT TGTGAAATACTTCAAAAAATGAATATTACGTATGATAACTTACGTGTACTTGGTAATACGTCGGGCCTTT TGCAGCTGTTATTTAACAGGTCCAGAGAACATGGCACACTGTGGTCTCTTATTATTGCTAAGTTGATCCT TTCCCGAAGCATTTCATCTGATGAAGTAAAACCACATTATAAGAGAAAAGAAAGTTTTTTTCCACTAACT GAAGGCAATTTGCATACCATTCAAAGTCTATGTCCATTTTTGTCAAAAGAAGAAAAGAAAGAATTTAGTG CTCAATGTATACCTGCTCTTTTGGGCTGGACTAAGAAAGATCTTTGCAGCACTAATGGAGGTTTTGGACA TCTTGCCATTTTCAATTCTTGTCTGCAAACCAAAAGTATAGATGATGGAGAGCTATTACATGGAATATTA AAAATCATAATATCCTGGAAGAAAGAGCATGAAGATATTTTTCTTTTCAGTTGTAATCTATCAGAAGCAA GTCCAGAGGTACTGGGTGTAAATATAGAAATAATCCGGTTTCTTTCCCTATTTCTGAAATACTGCTCATC CCCTTTGGCAGAGAGTGAGTGGGACTTCATCATGTGCTCCATGTTGGCTTGGTTGGAGACAACAAGTGAG AATCAGGCATTGTATTCTATTCCACTTGTGCAACTGTTTGCCTGTGTCAGCTGTGATTTGGCCTGTGACC TCAGTGCTTTCTTTGATTCCACAACTCTGGATACCATTGGCAATCTTCCTGTAAATCTAATCAGTGAATG GAAAGAATTTTTTTCCCAAGGCATCCACAGTTTGCTTTTACCTATTTTGGTGACTGTTACAGGAGAAAAC AAAGATGTGTCTGAAACATCCTTTCAGAATGCAATGCTGAAACCCATGTGTGAAACATTAACGTATATCT CAAAGGAACAGCTATTGAGTCACAAACTTCCTGCAAGATTAGTTGCTGACCAAAAAACAAACTTACCAGA ATATCTCCAGACTTTGTTAAATACATTGGCCCCATTACTCCTCTTCAGAGCTAGGCCTGTGCAAATTGCT GTTTATCATATGCTATACAAATTGATGCCTGAATTACCACAGTATGATCAGGATAATCTAAAGTCATACG GAGATGAAGAAGAAGAGCCAGCCTTGTCACCACCAGCAGCACTGATGTCTCTTCTTAGCATTCAAGAGGA CTTACTAGAAAATGTTTTGGGGTGTATTCCTGTTGGACAGATAGTTACTATTAAACCACTGAGTGAAGAC TTCTGTTATGTTCTGGGATACCTTCTCACTTGGAAATTAATACTAACTTTCTTCAAAGCTGCATCATCAC AGCTTCGGGCTTTGTATTCCATGTATCTTCGGAAAACAAAGAGTTTGAATAAATTGCTCTATCACCTGTT CAGGCTTATGCCAGAAAATCCAACCTATGCAGAGACAGCAGTTGAGGTCCCAAATAAGGACCCTAAAACA TTCTTTACTGAGGAGCTCCAGCTGAGTATTAGAGAAACAACAATGCTTCCATACCACATTCCACACTTGG CTTGTTCAGTCTATCATATGACATTAAAAGACTTGCCTGCCATGGTTAGGTTGTGGTGGAATAGCAGTGA GAAGCGTGTTTTCAATATTGTGGATAGATTTACAAGCAAGTATGTCAGCAGTGTTCTTTCTTTTCAAGAA ATATCTTCTGTACAAACAAGTACACAACTATTTAATGGCATGACGGTTAAAGCTCGAGCTACTACTCGAG AGGTAATGGCTACTTATACTATTGAGGACATAGTTATTGAACTTATAATACAACTGCCTTCAAATTATCC ACTGGGTTCAATAATAGTAGAAAGTGGGAAAAGAGTAGGAGTAGCTGTTCAGCAGTGGCGGAACTGGATG CTGCAGTTAAGCACTTACCTCACCCATCAGAATGGAAGTATTATGGAAGGCTTAGCTTTATGGAAAAATA ACGTAGACAAACGTTTTGAGGGTGTTGAAGATTGCATGATCTGTTTCTCAGTCATTCACGGTTTCAACTA TTCCCTTCCCAAAAAAGCCTGTAGAACATGCAAGAAAAAATTCCATTCAGCCTGCTTGTACAAATGGTTT ACATCTAGCAACAAATCCACTTGTCCACTGTGTCGTGAGACGTTTTTCTGA
Translation (1766 aa): MGGKNKQRTKGNLRPSNSGRAAELLAKEQGTVPGFIGFGTSQSDLGYVPAIQGAEEIDSLVDSDFRMVLR KLSKKDVTTKLKAMQEFGTMCTERDTETVKGVLPYWPRIFCKISLDHDRRVREATQQAFEKLILKVKKQL APYLKSLMGYWLMAQCDTYTPAAFAAKDAFEAAFPPSKQPEAIAFCKDEITSVLQDHLIKETPDTLSDPQ TVPEEEREAKFYRVVTCSLLALKRLLCLLPDNELDSLEEKFKSLLSQNKFWKYGKHSVPQIRSAYFELVS ALCQRIPQLMKEEASKVSPSVLLSIDDSDPIVCPALWEAVLYTLTTIEDCWLHVNAKKSVFPKLSTVIRE GGRGLATVIYPYLLPFISKLPQSITNPKLDFFKNFLTSLVAGLSTERTKTSSLESSAVISAFFECLRFIM QQNLGEEEIEQMLVNDQLIPFIDAVLKDPGLQHGQLFNHLAETLSSWEAKADTEKDEKTAHNLENVLIHF WERLSEICVAKISEPEADVESVLGVSNLLQVLQKPKSSLKSSKKKNGKVRFADEILESNKENEKCVSSEG EKIEGWELTTEPSLTHNSSGLLSPLRKKPLEDLVCKLADISINYVNERKSEQHLRFLSTLLDSFSSSRVF KMLLGDEKQSIVQAKPLEIAKLVQKNPAVQFLYQKLIGWLNEDQRKDFGFLVDILYSALRCCDNDMERKK VLDDLTKVDLKWNSLLKIIEKACPSSDKHALVTPWLKGDILGEKLVNLADCLCNEDLESRVSSESHFSER WTLLSLVLSQHVKNDYLIGDVYVERIIVRLHETLFKTKKLSEAESSDSSVSFICDVAYNYFSSAKGCLLM PSSEDLLLTLFQLCAQSKEKTHLPDFLICKLKNTWLSGVNLLVHQTDSSYKESTFLHLSALWLKNQVQAS SLDINSLQVLLSAVDDLLNTLLESEDSYLMGVYIGSVMPNDSEWEKMRQSLPMQWLHRPLLEGRLSLNYE CFKTDFKEQDIKTLPSHLCTSALLSKMVLIALRKETVLENNELEKIIAELLYSLQWCEELDNPPIFLIGF CEILQKMNITYDNLRVLGNTSGLLQLLFNRSREHGTLWSLIIAKLILSRSISSDEVKPHYKRKESFFPLT EGNLHTIQSLCPFLSKEEKKEFSAQCIPALLGWTKKDLCSTNGGFGHLAIFNSCLQTKSIDDGELLHGIL KIIISWKKEHEDIFLFSCNLSEASPEVLGVNIEIIRFLSLFLKYCSSPLAESEWDFIMCSMLAWLETTSE NQALYSIPLVQLFACVSCDLACDLSAFFDSTTLDTIGNLPVNLISEWKEFFSQGIHSLLLPILVTVTGEN KDVSETSFQNAMLKPMCETLTYISKEQLLSHKLPARLVADQKTNLPEYLQTLLNTLAPLLLFRARPVQIA VYHMLYKLMPELPQYDQDNLKSYGDEEEEPALSPPAALMSLLSIQEDLLENVLGCIPVGQIVTIKPLSED FCYVLGYLLTWKLILTFFKAASSQLRALYSMYLRKTKSLNKLLYHLFRLMPENPTYAETAVEVPNKDPKT FFTEELQLSIRETTMLPYHIPHLACSVYHMTLKDLPAMVRLWWNSSEKRVFNIVDRFTSKYVSSVLSFQE ISSVQTSTQLFNGMTVKARATTREVMATYTIEDIVIELIIQLPSNYPLGSIIVESGKRVGVAVQQWRNWM LQLSTYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWF TSSNKSTCPLCRETFF
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