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Report for CCDS5250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5250.1 Public Homo sapiens 6 NOX3 24 110 108 CCDS HistoryNCBI Gene:50508Re-query CCDS DB by CCDS ID:5250.1Re-query CCDS DB by GeneID:50508See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5250.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000159060.3 ENSP00000159060.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000159060.3Link to Ensembl Protein Viewer:ENSP00000159060.2Re-query CCDS DB by Nucleotide ID:ENST00000159060Re-query CCDS DB by Protein ID:ENSP00000159060
Original member Current member NCBI NM_015718.3 NP_056533.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015718.3Link to Protein Sequence:NP_056533.1Re-query CCDS DB by Nucleotide ID:NM_015718Re-query CCDS DB by Protein ID:NP_056533Link to BLAST:NP_056533.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056533.1 568 Q9HBY0 568 100% 0 0

Chromosomal Locations for CCDS 5250.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 155396836 155396962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155407130 155407254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155411214 155411360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155422694 155422856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155428794 155429047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155430843 155430935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155436418 155436547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155439956 155440137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155443273 155443418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155453404 155453488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155454811 155454921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155455034 155455129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155455753 155455800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGATGGGGTGCTGGATTTTGAATGAGGGTCTCTCCACCATATTAGTACTCTCATGGCTGGGAATAAATT
TTTATCTGTTTATTGACACGTTCTACTGGTATGAAGAGGAGGAGTCTTTCCATTACACACGAGTTATTTT
GGGTTCAACACTGGCTTGGGCACGAGCATCCGCACTGTGCCTGAATTTTAACTGCATGCTAATTCTAATA
CCTGTCAGTCGAAACCTTATTTCATTCATAAGAGGAACAAGTATTTGCTGCAGAGGACCGTGGAGGAGGC
AATTAGACAAAAACCTCAGATTTCACAAACTGGTCGCCTATGGGATAGCTGTTAATGCAACCATCCACAT
CGTGGCGCATTTCTTCAACCTGGAACGCTACCACTGGAGCCAGTCCGAGGAGGCCCAGGGACTTCTGGCC
GCACTTTCCAAGCTGGGCAACACCCCTAACGAGAGCTACCTCAACCCTGTCCGGACCTTCCCCACAAACA
CAACCACTGAATTGCTAAGGACAATAGCAGGCGTCACCGGTCTGGTGATCTCTCTGGCTTTAGTCTTGAT
CATGACCTCGTCAACTGAGTTCATCAGACAGGCCTCCTATGAGTTGTTCTGGTACACACACCATGTTTTC
ATCGTCTTCTTTCTCAGCCTGGCCATCCATGGGACGGGTCGGATTGTTCGAGGCCAAACCCAAGACAGTC
TCTCTCTGCACAACATCACCTTCTGTAGAGACCGCTATGCAGAATGGCAGACAGTGGCCCAATGCCCCGT
GCCTCAATTTTCTGGCAAGGAACCCTCGGCTTGGAAATGGATTTTAGGCCCTGTGGTCTTGTATGCATGT
GAAAGAATAATTAGGTTCTGGCGATTTCAACAAGAAGTTGTCATTACCAAGGTGGTAAGCCACCCCTCTG
GAGTCCTGGAACTTCACATGAAAAAGCGTGGCTTTAAAATGGCGCCAGGGCAGTACATCTTGGTGCAGTG
CCCAGCCATATCTTCGCTGGAGTGGCACCCCTTCACCCTTACCTCTGCCCCCCAGGAGGACTTTTTCAGC
GTGCACATCCGGGCAGCAGGAGACTGGACAGCAGCGCTACTGGAGGCCTTTGGGGCAGAGGGACAGGCCC
TCCAGGAGCCCTGGAGCCTGCCAAGGCTGGCAGTGGACGGGCCCTTTGGAACTGCCCTGACAGATGTATT
TCACTACCCAGTGTGTGTGTGCGTTGCCGCGGGGATCGGAGTCACTCCCTTCGCTGCTCTTCTGAAATCT
ATATGGTACAAATGCAGTGAGGCACAGACCCCACTGAAGCTGAGCAAGGTGTATTTCTACTGGATTTGCC
GGGATGCAAGAGCTTTTGAGTGGTTTGCTGATCTCTTACTCTCCCTGGAAACACGGATGAGTGAGCAGGG
GAAAACTCACTTTCTGAGTTATCATATATTTCTTACCGGCTGGGATGAAAATCAGGCTCTTCACATAGCT
TTACACTGGGACGAAAATACTGACGTGATTACAGGCTTAAAGCAGAAGACCTTCTATGGGAGGCCCAACT
GGAACAATGAGTTCAAGCAGATTGCCTACAATCACCCCAGCAGCAGTATTGGCGTGTTCTTCTGTGGACC
TAAAGCTCTCTCGAGGACACTTCAAAAGATGTGCCACTTGTATTCATCAGCTGACCCCAGAGGTGTTCAT
TTCTATTACAACAAGGAGAGCTTCTAG

Translation (568 aa):
MMGCWILNEGLSTILVLSWLGINFYLFIDTFYWYEEEESFHYTRVILGSTLAWARASALCLNFNCMLILI
PVSRNLISFIRGTSICCRGPWRRQLDKNLRFHKLVAYGIAVNATIHIVAHFFNLERYHWSQSEEAQGLLA
ALSKLGNTPNESYLNPVRTFPTNTTTELLRTIAGVTGLVISLALVLIMTSSTEFIRQASYELFWYTHHVF
IVFFLSLAIHGTGRIVRGQTQDSLSLHNITFCRDRYAEWQTVAQCPVPQFSGKEPSAWKWILGPVVLYAC
ERIIRFWRFQQEVVITKVVSHPSGVLELHMKKRGFKMAPGQYILVQCPAISSLEWHPFTLTSAPQEDFFS
VHIRAAGDWTAALLEAFGAEGQALQEPWSLPRLAVDGPFGTALTDVFHYPVCVCVAAGIGVTPFAALLKS
IWYKCSEAQTPLKLSKVYFYWICRDARAFEWFADLLLSLETRMSEQGKTHFLSYHIFLTGWDENQALHIA
LHWDENTDVITGLKQKTFYGRPNWNNEFKQIAYNHPSSSIGVFFCGPKALSRTLQKMCHLYSSADPRGVH
FYYNKESF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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