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Report for CCDS12230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12230.1 Public Homo sapiens 19 MRPL4 24 110 108 CCDS HistoryNCBI Gene:51073Re-query CCDS DB by CCDS ID:12230.1Re-query CCDS DB by GeneID:51073See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12230.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253099.11 ENSP00000253099.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253099.11Link to Ensembl Protein Viewer:ENSP00000253099.5Re-query CCDS DB by Nucleotide ID:ENST00000253099Re-query CCDS DB by Protein ID:ENSP00000253099
Original member Current member EBI ENST00000307422.9 ENSP00000306902.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000307422.9Link to Ensembl Protein Viewer:ENSP00000306902.5Re-query CCDS DB by Nucleotide ID:ENST00000307422Re-query CCDS DB by Protein ID:ENSP00000306902
Original member Current member NCBI NM_015956.3 NP_057040.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015956.3Link to Protein Sequence:NP_057040.2Re-query CCDS DB by Nucleotide ID:NM_015956Re-query CCDS DB by Protein ID:NP_057040Link to BLAST:NP_057040.2
Original member Current member NCBI NM_146387.2 NP_666499.1 Accepted alive Link to Nucleotide Sequence:NM_146387.2Link to Protein Sequence:NP_666499.1Re-query CCDS DB by Nucleotide ID:NM_146387Re-query CCDS DB by Protein ID:NP_666499Link to BLAST:NP_666499.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057040.2 311 Q9BYD3-1 311 100% 0 0
NP_666499.1 311 Q9BYD3-1 311 100% 0 0

Chromosomal Locations for CCDS 12230.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10252254 10252310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10252397 10252463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10252551 10252701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10254589 10254640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10256708 10256825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10258222 10258328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10258413 10258522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10258609 10258685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10259617 10259813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGCTGCAGTTCGTCCGGGCCGGGGCGCGGGCCTGGCTTCGGCCTACCGGCAGCCAGGGCCTGAGTTCCC
TGGCGGAAGAGGCAGCGCGTGCGACCGAGAACCCGGAGCAGGTGGCGAGCGAGGGTCTCCCGGAGCCCGT
GCTGCGCAAAGTCGAGCTCCCGGTACCCACTCATCGACGCCCAGTGCAGGCCTGGGTCGAGTCCTTGCGG
GGCTTCGAGCAGGAGCGCGTGGGCCTGGCCGACCTGCACCCCGATGTTTTCGCCACCGCGCCCAGGCTGG
ACATACTGCACCAGGTTGCTATGTGGCAGAAGAACTTCAAGAGAATTAGCTATGCCAAGACCAAGACGAG
AGCCGAGGTGCGGGGCGGTGGCCGGAAGCCTTGGCCGCAGAAAGGCACTGGGCGGGCCCGGCATGGCAGC
ATCCGCTCTCCGCTCTGGCGAGGAGGAGGTGTTGCCCATGGCCCCCGGGGCCCCACAAGTTACTACTACA
TGCTGCCCATGAAGGTGCGGGCGCTGGGTCTCAAAGTGGCACTGACCGTCAAGCTGGCCCAGGACGACCT
GCACATCATGGACTCCCTAGAGCTGCCCACCGGAGACCCACAGTACCTGACAGAGCTGGCGCACTACCGC
CGCTGGGGGGACTCCGTACTCCTCGTGGACTTAACACACGAGGAGATGCCACAGAGCATCGTGGAGGCCA
CCTCTAGGCTTAAGACCTTCAACTTGATCCCGGCTGTTGGCCTAAATGTGCACAGCATGCTCAAGCACCA
GACGCTGGTCCTGACGCTGCCCACCGTCGCCTTCCTGGAGGACAAGCTGCTCTGGCAGGACTCACGTTAC
AGACCCCTCTACCCCTTCAGCCTGCCCTACAGCGACTTCCCCCGACCCCTACCCCACGCTACCCAGGGCC
CAGCGGCCACCCCGTACCACTGTTGA

Translation (311 aa):
MLQFVRAGARAWLRPTGSQGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRRPVQAWVESLR
GFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGS
IRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYR
RWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLLWQDSRY
RPLYPFSLPYSDFPRPLPHATQGPAATPYHC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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