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Report for CCDS48066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48066.1 Public Homo sapiens 9 EXD3 24 110 108 CCDS HistoryNCBI Gene:54932Re-query CCDS DB by CCDS ID:48066.1Re-query CCDS DB by GeneID:54932See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48066.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340951.9 ENSP00000340474.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340951.9Link to Ensembl Protein Viewer:ENSP00000340474.4Re-query CCDS DB by Nucleotide ID:ENST00000340951Re-query CCDS DB by Protein ID:ENSP00000340474
Original member Current member NCBI NM_017820.5 NP_060290.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017820.5Link to Protein Sequence:NP_060290.3Re-query CCDS DB by Nucleotide ID:NM_017820Re-query CCDS DB by Protein ID:NP_060290Link to BLAST:NP_060290.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060290.3 876 Q8N9H8-1 876 100% 0 0

Chromosomal Locations for CCDS 48066.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 137306950 137307263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137307608 137307646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137309607 137309700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137323725 137323856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137324090 137324143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137348071 137348238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137349110 137349282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137349369 137349531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137351038 137351147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137351318 137351528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137352066 137352201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137352620 137352786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137354339 137354377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137354700 137354773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137356268 137356368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137366493 137366632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137367936 137367989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137372905 137373072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137373426 137373599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137383313 137383377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137395303 137395357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2631 nt):
ATGGACCCAGGAGATCCCGCTGGTGACCCTGCCGCTGGCGAGCGCCACCGCATGGGCCGGGACCCCCTCC
TGCTCCTGCAGGCCCTGCAGACCCTGTGGTCCACGCGGGAGCGGAAGCAGCTCCGGGAGGAAGCCTGGCG
GGGGTTTGCTGCCTTGGACGACCCCCTGGCCGGGCTTCTGGACATGCTGGAGAGCTGCCGGGGCCAGCGG
GGAGAGGGCCCCTCCCTGGCGGCCTGGATCTCCCACCAGCTGCAGTGCTGGCTACAGGCACAGCCATGCC
CGAGCCTGGCCCAGCACAGCCTGAGGCTGAAGCAGCTGCAGGCCCGAGCGGTCAAAGTCCTCACTGAGAG
CCCCCCCAGCCTTGCGGCACCACTGGCCAGCATCTTCCAGCTGCAGGATGCAGACAGGAGCTGCCTGCTG
GCACACGTCCACCGCCTCCACCACGAGGGCAGGTTCAGAGAAGCAGCCACGCTGGGCGCGACGTTGAAGC
TGCAGTCGGAGCTTGGCGTTGAAAAGATGAGCATCCCACTGCTCCTCCAGGACAAGGTGGCCCTCGTGGA
GCGCTATGTGGCCGGCTTCCCGGACCTCCAGAGGAGGCTGCTGGTCCTCATGGATTCCTGGTGCCAGCCC
GGCTTTGACATCAAGGACGTTGCCAGACGGTACCCTGAGGTGACCTCCTTGAGCCTGGAGAAGCTGAGTC
CGAAGGCGCTGAGCAGGCAGGTCTTGCGTCTGCAGGAGCGGTACGGCGTAGCCCCAGCGCTGTGTCCCAA
CGCGGCCATTCAGCAGCGCCTGGCGGCCCTGCGGCACCTGTGCCACAAGCGGTTTGTGGAGAAGAGCCTG
TCACAGGAGAACTGGACCGACCATGTGCAGGGCCTGGTGGGGCAGAGCCCGTGGCTTCAGGAGCAGCTGT
CTCAGCTGCTGGTCTCCCACAGTGACCCAGTCACGGCCGCCCAGTGTGCCATGGAACTCTTGCTGCCCGA
GGAGCGGCTGCCGGCTGCGGTGGCTGTGGAACTCCGCCGGTTCAGGCTCCAGGGGAGGGCGACTGAGGCT
GACTCGAGGCTGGAGGTGAAGGACATGAAGGACCGTTACTACCAGCTGCCCATCCCCAGGGAGAACGTCC
ACCTCCTGGCCTCGTGGGAAGACCTGACCAGACACGAGGGTGCACTCCTGCAGTGCCACCAAGTGGTTGG
TGTAGACGTGGAGTGGACACCTGTGTTTGTTGCTGGGGGCCGGCCTCGGCCGTCACTCCTGCAGGTGGCC
GTGGAGGGCCACGTGTTCCTTCTGGACGTCCTGGCACTCTCGCAGCCACCAACAGGGCAGGGAGCCCAGG
CCTTTTCCCGGCTGGTGGCCCAGCTCCTCTCGGACCCCTCTATCACCAAGCTGGGCTACGGGATGGTGGG
GGACCTGCAAAAACTGGGCACGTCCTGCCCCGCCCTGGCCCATGTGGAGAAGCAGATTCTGGGCGGCATG
GACCTGCTGCTGGTGCACAGACAGATGCGGGTGGCGAGCGTGCCAGCCCCAGCCGTGGACAGGGCCAGGG
AGCTGAGGGGCCTGAGCCTCCTGGTGCAGCAGGTGCTGGGCACAGCCCTGGACAAGACGCAGCAGCTGTC
CAACTGGGACCGGAGGCCGCTCTGCGAGGAGCAGGTCATCTACGCAGCTGCCGACGCCTACTGCCTGCTG
GAGGTGCACCAAGCCCTGTGCAGAGAGCCCGCCCGCTTCCACCTGTCGGAGGACCTGGCTGGGAGCCGGA
GGCCCAGGCACAGAGAGAGACCAGGGGCACGGAAGCCACCCGGCCTGCAGAAAGCGTCAGCACCGGCCGC
ACCCAGGCAGGTCCCTGTGGCTGTGGCTGTGTCTGAGGGCGCTGCCCCTCAGATTCCGGCCAGGGCCTTC
CGTGTGGTGTGTGACAACATGCTGCAGGGGCTGGCACGGAGCCTCCGCTGTCTCGGTGTGGATGCACGCA
TGCTGGGCAATGGTGAAGACCACCGCAGGGCGGCCGAGGTTGCCAGGCAGGAGGGGAGGATCATTCTGAC
GTCGGGGCAGCCATTCCACAAGCTCCGGGCCCAGGTCGGGGCTGGGCGCTGCCTCTCGGTCGACTGCTCC
CTGAAGGCCCAGCAGCAGGCCAAGGCTGTGCTCAAGCATTTCAACGTGCGTGTCACCCACGCAGACATCT
TCAGCCGCTGCCAGGCCTGTAACTGTGACCAGTACCTAAAGGTCTCCAGGGACATGATGAAGCAGCTCAT
GTGGCTCAGCAGTCACCAGGAGGGGCCCAGGAGCTCAGGTGACGAGGCCACCCAGAGCCAGGCGGTGCAG
GAGCCAGGCCCAGCCCCAGACGCAGCCCCTGAGGGCTGCACCTATGACCGCCCCTGCCGCTGGCTGCAGA
TGGCTGACCTGCGGGCGGAGACACCGGACATGCTGGCCGACGGCACCCGGCTGCAGCTGGCAGGGGTCCC
GGTGGGTGTGCTGAGGACACCTGGGCTGCGGTGCTTCTACTGCTGCACGGGCTGTGGAAAGGTCTTCTGG
GACGGCTCCCACCTGGGTCGTGTTGCCACCCACTTCCGAGACATGCTGGAGAGCGCCCCCAGCCCCTGCG
AGCCGAGCCCAGCCCCCAGCCCGGCCAGCAGTCCCTTCTGA

Translation (876 aa):
MDPGDPAGDPAAGERHRMGRDPLLLLQALQTLWSTRERKQLREEAWRGFAALDDPLAGLLDMLESCRGQR
GEGPSLAAWISHQLQCWLQAQPCPSLAQHSLRLKQLQARAVKVLTESPPSLAAPLASIFQLQDADRSCLL
AHVHRLHHEGRFREAATLGATLKLQSELGVEKMSIPLLLQDKVALVERYVAGFPDLQRRLLVLMDSWCQP
GFDIKDVARRYPEVTSLSLEKLSPKALSRQVLRLQERYGVAPALCPNAAIQQRLAALRHLCHKRFVEKSL
SQENWTDHVQGLVGQSPWLQEQLSQLLVSHSDPVTAAQCAMELLLPEERLPAAVAVELRRFRLQGRATEA
DSRLEVKDMKDRYYQLPIPRENVHLLASWEDLTRHEGALLQCHQVVGVDVEWTPVFVAGGRPRPSLLQVA
VEGHVFLLDVLALSQPPTGQGAQAFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAHVEKQILGGM
DLLLVHRQMRVASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLCEEQVIYAAADAYCLL
EVHQALCREPARFHLSEDLAGSRRPRHRERPGARKPPGLQKASAPAAPRQVPVAVAVSEGAAPQIPARAF
RVVCDNMLQGLARSLRCLGVDARMLGNGEDHRRAAEVARQEGRIILTSGQPFHKLRAQVGAGRCLSVDCS
LKAQQQAKAVLKHFNVRVTHADIFSRCQACNCDQYLKVSRDMMKQLMWLSSHQEGPRSSGDEATQSQAVQ
EPGPAPDAAPEGCTYDRPCRWLQMADLRAETPDMLADGTRLQLAGVPVGVLRTPGLRCFYCCTGCGKVFW
DGSHLGRVATHFRDMLESAPSPCEPSPAPSPASSPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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