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Report for CCDS31998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31998.1 Public Homo sapiens 13 NDFIP2 24 110 108 CCDS HistoryNCBI Gene:54602Re-query CCDS DB by CCDS ID:31998.1Re-query CCDS DB by GeneID:54602See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31998.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000218652.12 ENSP00000218652.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000218652.12Link to Ensembl Protein Viewer:ENSP00000218652.7Re-query CCDS DB by Nucleotide ID:ENST00000218652Re-query CCDS DB by Protein ID:ENSP00000218652
Original member Current member NCBI NM_019080.3 NP_061953.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019080.3Link to Protein Sequence:NP_061953.2Re-query CCDS DB by Nucleotide ID:NM_019080Re-query CCDS DB by Protein ID:NP_061953Link to BLAST:NP_061953.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061953.2 336 Q9NV92 336 100% 0 0

Chromosomal Locations for CCDS 31998.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 79481204 79481524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79520810 79520975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79533323 79533456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79539682 79539775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79543558 79543682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79548328 79548394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79551017 79551120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGGCACGCCGGCGGAGCCAGCGAGTCTGCGCGAGCGGTCCGAGCATGCTCAATAGCGCGCGCGGCGCCC
CGGAGCTTCTCCGCGGAACCGCGACCAACGCGGAGGTCTCGGCGGCCGCTGCGGGAGCCACAGGAAGTGA
AGAGCTTCCGCCGGGAGACCGCGGCTGCAGGAACGGAGGCGGAAGGGGCCCTGCGGCGACGACGTCGTCG
ACGGGGGTGGCCGTGGGAGCTGAGCACGGAGAAGACTCCCTCTCTCGGAAGCCGGATCCCGAGCCGGGCA
GGATGGATCACCACCAGCCGGGGACTGGGCGCTACCAGGTGCTTCTTAATGAAGAGGATAACTCAGAATC
ATCGGCTATAGAGCAGCCACCTACTTCAAACCCAGCACCGCAGATTGTGCAGGCTGCGTCTTCAGCACCA
GCACTTGAAACTGACTCTTCCCCTCCACCATATAGTAGTATTACTGTGGAAGTACCTACAACTTCAGATA
CAGAAGTTTACGGTGAGTTTTATCCCGTGCCACCTCCCTATAGCGTTGCTACCTCTCTTCCTACATACGA
TGAAGCTGAGAAGGCTAAAGCTGCTGCAATGGCAGCTGCAGCAGCAGAAACATCTCAAAGAATTCAGGAG
GAAGAGTGTCCACCAAGAGATGACTTCAGTGATGCAGACCAGCTCAGAGTGGGGAATGATGGCATTTTCA
TGCTGGCATTTTTCATGGCATTTATTTTCAACTGGCTTGGATTTTGTTTATCCTTCTGTATCACCAATAC
CATAGCTGGAAGGTATGGTGCTATCTGCGGATTTGGCCTTTCCTTGATCAAATGGATCCTTATTGTCAGG
TTTTCTGATTATTTTACTGGATATTTCAATGGACAGTATTGGCTTTGGTGGATATTTCTTGTACTTGGCC
TGCTCCTTTTCTTCAGAGGATTTGTTAATTATCTAAAAGTCAGAAACATGTCTGAAAGTATGGCAGCTGC
TCATAGAACAAGGTATTTCTTCTTATTGTAG

Translation (336 aa):
MARRRSQRVCASGPSMLNSARGAPELLRGTATNAEVSAAAAGATGSEELPPGDRGCRNGGGRGPAATTSS
TGVAVGAEHGEDSLSRKPDPEPGRMDHHQPGTGRYQVLLNEEDNSESSAIEQPPTSNPAPQIVQAASSAP
ALETDSSPPPYSSITVEVPTTSDTEVYGEFYPVPPPYSVATSLPTYDEAEKAKAAAMAAAAAETSQRIQE
EECPPRDDFSDADQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSLIKWILIVR
FSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRYFFLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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