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Report for CCDS981.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
981.1 Public Homo sapiens 1 CDC42SE1 24 110 108 CCDS HistoryNCBI Gene:56882Re-query CCDS DB by CCDS ID:981.1Re-query CCDS DB by GeneID:56882See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 981.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357235.6 ENSP00000349773.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357235.6Link to Ensembl Protein Viewer:ENSP00000349773.4Re-query CCDS DB by Nucleotide ID:ENST00000357235Re-query CCDS DB by Protein ID:ENSP00000349773
Original member Current member EBI ENST00000540998.5 ENSP00000445647.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540998.5Link to Ensembl Protein Viewer:ENSP00000445647.1Re-query CCDS DB by Nucleotide ID:ENST00000540998Re-query CCDS DB by Protein ID:ENSP00000445647
Original member Current member EBI ENST00000439374.6 ENSP00000475845.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439374.6Link to Ensembl Protein Viewer:ENSP00000475845.1Re-query CCDS DB by Nucleotide ID:ENST00000439374Re-query CCDS DB by Protein ID:ENSP00000475845
Original member Current member NCBI NM_001038707.2 NP_001033796.1 Accepted alive Link to Nucleotide Sequence:NM_001038707.2Link to Protein Sequence:NP_001033796.1Re-query CCDS DB by Nucleotide ID:NM_001038707Re-query CCDS DB by Protein ID:NP_001033796Link to BLAST:NP_001033796.1
Original member Current member NCBI NM_020239.4 NP_064624.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020239.4Link to Protein Sequence:NP_064624.1Re-query CCDS DB by Nucleotide ID:NM_020239Re-query CCDS DB by Protein ID:NP_064624Link to BLAST:NP_064624.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033796.1 79 Q9NRR8-1 79 100% 0 0
NP_064624.1 79 Q9NRR8-1 79 100% 0 0

Chromosomal Locations for CCDS 981.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151054247 151054321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151055016 151055126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151055677 151055730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (240 nt):
ATGAGTGAATTTTGGCACAAACTGGGCTGCTGTGTGGTAGAGAAACCCCAGCCGAAGAAGAAGAGAAGAC
GGATTGACCGGACCATGATTGGGGAACCAATGAATTTTGTTCACCTGACTCACATTGGCTCAGGGGAGAT
GGGGGCCGGAGATGGACTTGCCATGACAGGTGCAGTTCAGGAGCAGATGAGATCCAAGGGAAACCGAGAT
AGGCCATGGAGCAATTCTAGGGGCTTATAG

Translation (79 aa):
MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQEQMRSKGNRD
RPWSNSRGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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