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Report for CCDS11915.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11915.1 Public Homo sapiens 18 GALNT1 24 110 108 CCDS HistoryNCBI Gene:2589Re-query CCDS DB by CCDS ID:11915.1Re-query CCDS DB by GeneID:2589See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11915.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269195.6 ENSP00000269195.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269195.6Link to Ensembl Protein Viewer:ENSP00000269195.4Re-query CCDS DB by Nucleotide ID:ENST00000269195Re-query CCDS DB by Protein ID:ENSP00000269195
Original member Current member NCBI NM_001384438.1 NP_001371367.1 Accepted alive Link to Nucleotide Sequence:NM_001384438.1Link to Protein Sequence:NP_001371367.1Re-query CCDS DB by Nucleotide ID:NM_001384438Re-query CCDS DB by Protein ID:NP_001371367Link to BLAST:NP_001371367.1
Original member Current member NCBI NM_001384439.1 NP_001371368.1 Accepted alive Link to Nucleotide Sequence:NM_001384439.1Link to Protein Sequence:NP_001371368.1Re-query CCDS DB by Nucleotide ID:NM_001384439Re-query CCDS DB by Protein ID:NP_001371368Link to BLAST:NP_001371368.1
Original member Current member NCBI NM_001384440.1 NP_001371369.1 Accepted alive Link to Nucleotide Sequence:NM_001384440.1Link to Protein Sequence:NP_001371369.1Re-query CCDS DB by Nucleotide ID:NM_001384440Re-query CCDS DB by Protein ID:NP_001371369Link to BLAST:NP_001371369.1
Original member Current member NCBI NM_001384441.1 NP_001371370.1 Accepted alive Link to Nucleotide Sequence:NM_001384441.1Link to Protein Sequence:NP_001371370.1Re-query CCDS DB by Nucleotide ID:NM_001384441Re-query CCDS DB by Protein ID:NP_001371370Link to BLAST:NP_001371370.1
Original member Current member NCBI NM_001384442.1 NP_001371371.1 Accepted alive Link to Nucleotide Sequence:NM_001384442.1Link to Protein Sequence:NP_001371371.1Re-query CCDS DB by Nucleotide ID:NM_001384442Re-query CCDS DB by Protein ID:NP_001371371Link to BLAST:NP_001371371.1
Original member Current member NCBI NM_001384443.1 NP_001371372.1 Accepted alive Link to Nucleotide Sequence:NM_001384443.1Link to Protein Sequence:NP_001371372.1Re-query CCDS DB by Nucleotide ID:NM_001384443Re-query CCDS DB by Protein ID:NP_001371372Link to BLAST:NP_001371372.1
Original member Current member NCBI NM_001384444.1 NP_001371373.1 Accepted alive Link to Nucleotide Sequence:NM_001384444.1Link to Protein Sequence:NP_001371373.1Re-query CCDS DB by Nucleotide ID:NM_001384444Re-query CCDS DB by Protein ID:NP_001371373Link to BLAST:NP_001371373.1
Original member Current member NCBI NM_001384445.1 NP_001371374.1 Accepted alive Link to Nucleotide Sequence:NM_001384445.1Link to Protein Sequence:NP_001371374.1Re-query CCDS DB by Nucleotide ID:NM_001384445Re-query CCDS DB by Protein ID:NP_001371374Link to BLAST:NP_001371374.1
Original member Current member NCBI NM_001384446.1 NP_001371375.1 Accepted alive Link to Nucleotide Sequence:NM_001384446.1Link to Protein Sequence:NP_001371375.1Re-query CCDS DB by Nucleotide ID:NM_001384446Re-query CCDS DB by Protein ID:NP_001371375Link to BLAST:NP_001371375.1
Original member Current member NCBI NM_020474.4 NP_065207.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020474.4Link to Protein Sequence:NP_065207.2Re-query CCDS DB by Nucleotide ID:NM_020474Re-query CCDS DB by Protein ID:NP_065207Link to BLAST:NP_065207.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371367.1 559 Q10472-1 559 100% 0 0
NP_001371368.1 559 Q10472-1 559 100% 0 0
NP_001371369.1 559 Q10472-1 559 100% 0 0
NP_001371370.1 559 Q10472-1 559 100% 0 0
NP_001371371.1 559 Q10472-1 559 100% 0 0
NP_001371372.1 559 Q10472-1 559 100% 0 0
NP_001371373.1 559 Q10472-1 559 100% 0 0
NP_001371374.1 559 Q10472-1 559 100% 0 0
NP_001371375.1 559 Q10472-1 559 100% 0 0
NP_065207.2 559 Q10472-1 559 100% 0 0

Chromosomal Locations for CCDS 11915.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 35654663 35654801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35663628 35663802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35677591 35677757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35683391 35683598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35687016 35687186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35689173 35689290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35691012 35691192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35692181 35692320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35702897 35702995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35703509 35703643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35709624 35709770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGAGAAAATTTGCATACTGCAAGGTGGTCCTAGCCACCTCCTTGATTTGGGTACTCTTGGATATGTTCC
TGCTGCTTTACTTCAGTGAATGCAACAAATGTGATGAAAAAAAGGAGAGAGGACTTCCTGCTGGAGATGT
TCTAGAGCCAGTACAAAAGCCTCATGAAGGTCCTGGAGAAATGGGGAAACCAGTCGTCATTCCTAAAGAG
GATCAAGAAAAGATGAAAGAGATGTTTAAAATCAATCAGTTCAATTTAATGGCAAGTGAGATGATTGCAC
TCAACAGATCTTTACCAGATGTTAGGTTAGAAGGGTGTAAAACAAAGGTGTATCCAGATAATCTTCCTAC
AACAAGTGTGGTGATTGTTTTCCACAATGAGGCTTGGAGCACACTTCTGCGAACTGTCCATAGTGTCATT
AATCGCTCACCAAGACACATGATAGAAGAAATTGTTCTAGTAGATGATGCCAGTGAAAGAGACTTTTTGA
AAAGGCCTTTAGAGAGTTATGTGAAAAAACTAAAAGTACCAGTTCATGTAATTCGAATGGAACAACGTTC
TGGATTGATCAGAGCTAGATTAAAAGGAGCTGCTGTGTCTAAAGGCCAAGTGATCACCTTCCTGGATGCC
CATTGTGAGTGTACAGTGGGATGGCTGGAGCCTCTCTTGGCCAGGATCAAACATGACAGGAGAACAGTGG
TGTGTCCCATCATCGATGTGATCAGTGATGATACTTTTGAGTACATGGCAGGCTCTGATATGACCTATGG
TGGGTTCAACTGGAAGCTCAATTTTCGCTGGTATCCTGTTCCCCAAAGAGAAATGGACAGAAGGAAAGGT
GATCGGACTCTTCCTGTCAGGACACCTACCATGGCAGGAGGCCTTTTTTCAATAGACAGAGATTACTTTC
AGGAAATTGGAACATATGATGCTGGAATGGATATTTGGGGAGGAGAAAACCTAGAAATTTCCTTTAGGAT
TTGGCAGTGTGGAGGAACTTTGGAAATTGTTACATGCTCACATGTTGGACATGTGTTTCGGAAAGCTACA
CCTTACACGTTTCCAGGAGGCACAGGGCAGATTATCAATAAAAATAACAGACGACTTGCAGAAGTGTGGA
TGGATGAATTCAAGAATTTCTTCTATATAATTTCTCCAGGTGTTACAAAGGTAGATTATGGAGATATATC
GTCAAGAGTTGGTCTAAGACACAAACTACAATGCAAACCTTTTTCCTGGTACCTAGAGAATATATATCCT
GATTCTCAAATTCCACGTCACTATTTCTCATTGGGAGAGATACGAAATGTGGAAACGAATCAGTGTCTAG
ATAACATGGCTAGAAAAGAGAATGAAAAAGTTGGAATTTTTAATTGCCATGGTATGGGGGGTAATCAGGT
TTTCTCTTATACTGCCAACAAAGAAATTAGAACAGATGACCTTTGCTTGGATGTTTCCAAACTTAATGGC
CCAGTTACAATGCTCAAATGCCACCACCTAAAAGGCAACCAACTCTGGGAGTATGACCCAGTGAAATTAA
CCCTGCAGCATGTGAACAGTAATCAGTGCCTGGATAAAGCCACAGAAGAGGATAGCCAGGTGCCCAGCAT
TAGAGACTGCAATGGAAGTCGGTCCCAGCAGTGGCTTCTTCGAAACGTCACCCTGCCAGAAATATTCTGA

Translation (559 aa):
MRKFAYCKVVLATSLIWVLLDMFLLLYFSECNKCDEKKERGLPAGDVLEPVQKPHEGPGEMGKPVVIPKE
DQEKMKEMFKINQFNLMASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVI
NRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSKGQVITFLDA
HCECTVGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKG
DRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKAT
PYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRVGLRHKLQCKPFSWYLENIYP
DSQIPRHYFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLNG
PVTMLKCHHLKGNQLWEYDPVKLTLQHVNSNQCLDKATEEDSQVPSIRDCNGSRSQQWLLRNVTLPEIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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