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Report for CCDS1054.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1054.1 Public Homo sapiens 1 GATAD2B 24 110 108 CCDS HistoryNCBI Gene:57459Re-query CCDS DB by CCDS ID:1054.1Re-query CCDS DB by GeneID:57459See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1054.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368655.5 ENSP00000357644.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368655.5Link to Ensembl Protein Viewer:ENSP00000357644.4Re-query CCDS DB by Nucleotide ID:ENST00000368655Re-query CCDS DB by Protein ID:ENSP00000357644
Original member Current member EBI ENST00000634544.1 ENSP00000489184.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000634544.1Link to Ensembl Protein Viewer:ENSP00000489184.1Re-query CCDS DB by Nucleotide ID:ENST00000634544Re-query CCDS DB by Protein ID:ENSP00000489184
Original member Current member NCBI NM_020699.4 NP_065750.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020699.4Link to Protein Sequence:NP_065750.1Re-query CCDS DB by Nucleotide ID:NM_020699Re-query CCDS DB by Protein ID:NP_065750Link to BLAST:NP_065750.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065750.1 593 Q8WXI9 593 100% 0 0

Chromosomal Locations for CCDS 1054.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153810177 153810310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153811731 153811848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153812022 153812132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153813250 153813452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153816273 153816588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153817372 153817542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153818040 153818171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153818791 153818922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153819606 153819735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153828013 153828347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGATAGAATGACAGAAGATGCTCTTCGCTTGAATCTGTTGAAGCGGAGCTTGGACCCAGCAGATGAGC
GAGATGATGTCCTGGCAAAGCGACTCAAAATGGAGGGGCATGAGGCCATGGAACGTCTGAAAATGTTGGC
ATTGCTCAAAAGGAAGGATTTGGCAAATCTTGAGGTGCCACATGAGTTACCCACCAAACAGGATGGCAGT
GGTGTCAAGGGCTATGAAGAAAAACTTAACGGGAATCTCAGGCCTCATGGAGACAACAGGACTGCTGGAA
GGCCAGGCAAAGAAAACATCAATGATGAGCCTGTGGATATGAGTGCTAGACGGAGTGAGCCAGAGCGAGG
AAGGCTAACTCCCTCACCAGACATCATTGTTTTGTCTGACAATGAGGCTTCCAGTCCCCGTTCCAGTTCC
AGAATGGAAGAAAGACTCAAAGCAGCCAACTTAGAGATGTTTAAGGGGAAAGGCATTGAGGAGCGGCAGC
AGCTTATCAAGCAGCTGAGGGATGAGCTACGATTGGAAGAAGCCCGACTGGTCCTGTTAAAGAAACTGAG
ACAGAGTCAGCTACAGAAAGAGAATGTGGTCCAGAAGACTCCAGTTGTACAGAATGCAGCATCTATTGTT
CAGCCATCTCCTGCCCATGTGGGACAGCAGGGCCTATCTAAGCTTCCCTCTCGGCCTGGGGCCCAAGGGG
TTGAACCTCAAAATTTGAGAACATTACAGGGTCACAGTGTCATCCGTTCAGCTACCAATACCACCCTTCC
ACACATGTTGATGTCTCAACGTGTTATTGCACCAAACCCAGCCCAGCTACAGGGTCAGCGGGGCCCGCCT
AAGCCTGGCCTTGTACGCACCACAACACCCAACATGAATCCCGCCATCAATTATCAACCGCAGTCAAGTT
CTTCTGTTCCATGTCAGCGTACAACATCCTCTGCCATCTATATGAACCTTGCTTCTCATATCCAGCCAGG
GACGGTGAACAGAGTGTCCTCGCCACTTCCTAGCCCCAGCGCCATGACTGATGCTGCCAACTCACAGGCT
GCAGCCAAATTGGCTCTTCGCAAACAGCTGGAAAAGACACTCCTGGAGATCCCACCCCCTAAACCTCCTG
CTCCCTTACTTCATTTCTTGCCTAGTGCAGCCAATAGCGAGTTCATCTACATGGTAGGCTTGGAAGAAGT
CGTACAGAGTGTCATTGACAGCCAAGGCAAAAGCTGTGCCTCACTTCTGCGGGTTGAACCCTTTGTATGT
GCCCAGTGCCGCACAGATTTCACCCCTCACTGGAAGCAAGAAAAGAATGGTAAGATTCTATGTGAGCAGT
GTATGACCTCCAACCAGAAAAAGGCTCTAAAAGCTGAACACACCAACCGGCTGAAAAATGCATTTGTGAA
AGCCCTACAGCAGGAACAGGAAATTGAACAGCGATTACAGCAGCAGGCAGCCCTCTCCCCCACTACGGCT
CCAGCTGTGTCCAGTGTCAGTAAACAAGAGACCATCATGAGACATCATACGCTTCGGCAGGCTCCACAGC
CCCAGAGCAGCCTCCAGCGTGGCATACCCACATCTGCCCGCTCCATGCTTTCAAACTTTGCACAGGCACC
CCAGTTGTCTGTGCCAGGTGGCCTCCTTGGTATGCCAGGTGTCAACATTGCATACTTGAATACTGGCATC
GGAGGACACAAAGGCCCCAGTTTGGCAGACCGACAGCGTGAATACCTTTTAGACATGATCCCTCCCCGGT
CTATATCGCAGTCCATCAGTGGACAGAAATAA

Translation (593 aa):
MDRMTEDALRLNLLKRSLDPADERDDVLAKRLKMEGHEAMERLKMLALLKRKDLANLEVPHELPTKQDGS
GVKGYEEKLNGNLRPHGDNRTAGRPGKENINDEPVDMSARRSEPERGRLTPSPDIIVLSDNEASSPRSSS
RMEERLKAANLEMFKGKGIEERQQLIKQLRDELRLEEARLVLLKKLRQSQLQKENVVQKTPVVQNAASIV
QPSPAHVGQQGLSKLPSRPGAQGVEPQNLRTLQGHSVIRSATNTTLPHMLMSQRVIAPNPAQLQGQRGPP
KPGLVRTTTPNMNPAINYQPQSSSSVPCQRTTSSAIYMNLASHIQPGTVNRVSSPLPSPSAMTDAANSQA
AAKLALRKQLEKTLLEIPPPKPPAPLLHFLPSAANSEFIYMVGLEEVVQSVIDSQGKSCASLLRVEPFVC
AQCRTDFTPHWKQEKNGKILCEQCMTSNQKKALKAEHTNRLKNAFVKALQQEQEIEQRLQQQAALSPTTA
PAVSSVSKQETIMRHHTLRQAPQPQSSLQRGIPTSARSMLSNFAQAPQLSVPGGLLGMPGVNIAYLNTGI
GGHKGPSLADRQREYLLDMIPPRSISQSISGQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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