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Report for CCDS12945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12945.1 Public Homo sapiens 19 ZNF471 24 110 108 CCDS HistoryNCBI Gene:57573Re-query CCDS DB by CCDS ID:12945.1Re-query CCDS DB by GeneID:57573See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12945.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308031.10 ENSP00000309161.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308031.10Link to Ensembl Protein Viewer:ENSP00000309161.4Re-query CCDS DB by Nucleotide ID:ENST00000308031Re-query CCDS DB by Protein ID:ENSP00000309161
Original member Current member NCBI NM_020813.4 NP_065864.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020813.4Link to Protein Sequence:NP_065864.2Re-query CCDS DB by Nucleotide ID:NM_020813Re-query CCDS DB by Protein ID:NP_065864Link to BLAST:NP_065864.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065864.2 626 Q9BX82-1 626 100% 0 0

Chromosomal Locations for CCDS 12945.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 56511572 56511604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56516275 56516401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56518482 56518577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56524324 56525948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGAATGTTGAAGTAGTAAAAGTCATGCCCCAGGACTTAGTGACATTCAAGGATGTGGCAATAGATTTTT
CCCAGGAAGAATGGCAATGGATGAACCCTGCTCAGAAGCGTTTATACAGGAGTATGATGTTGGAGAACTA
TCAGAGCCTGGTATCACTTGGTCTTTGCATTTCTAAGCCATATGTGATCTCCTTATTGGAGCAAGGGAGA
GAGCCTTGGGAGATGACGAGTGAGATGACAAGAAGCCCATTCTCAGATTGGGAATCTATATATGTGACAC
AGGAATTACCTCTGAAGCAGTTCATGTATGATGATGCATGCATGGAGGGAATTACTAGCTATGGACTTGA
GTGTTCCACTTTTGAAGAAAATTGGAAATGGGAAGACCTTTTTGAGAAGCAGATGGGAAGTCATGAGATG
TTTAGCAAGAAAGAAATAATCACTCATAAAGAAACCATCACTAAGGAAACAGAATTCAAATATACTAAAT
TTGGGAAATGTATCCATCTGGAAAACATAGAAGAGAGTATTTATAATCACACATCAGATAAAAAAAGCTT
CTCCAAAAATTCTATGGTAATAAAACACAAGAAAGTCTATGTAGGAAAGAAGCTTTTTAAATGTAATGAA
TGTGACAAAACCTTCACCCATAGCTCATCCCTTACTGTTCATTTTAGAATTCATACTGGTGAAAAACCAT
ATGCATGTGAGGAATGTGGAAAAGCCTTCAAGCAAAGGCAACACCTTGCTCAACATCACAGAACACATAC
TGGAGAGAAACTCTTTGAATGTAAAGAATGTAGGAAAGCCTTCAAACAAAGTGAACACCTTATTCAGCAT
CAAAGAATTCATACTGGAGAAAAACCATATAAATGTAAGGAATGCAGAAAAGCCTTCAGACAGCCTGCAC
ACCTTGCTCAGCATCAGAGAATTCATACTGGAGAGAAACCCTATGAATGTAAAGAATGTGGCAAAGCCTT
CAGTGATGGCTCGTCTTTTGCTCGACATCAGAGATGTCACACTGGCAAAAGACCCTATGAATGTATTGAG
TGTGGGAAGGCTTTTAGGTATAACACATCTTTTATTCGTCACTGGAGGAGTTATCATACTGGAGAGAAGC
CTTTTAATTGCATTGATTGTGGGAAAGCCTTCAGTGTTCACATAGGACTTATTCTGCATAGGAGAATTCA
TACAGGAGAGAAACCTTACAAATGTGGTGTGTGTGGAAAAACCTTCAGCTCGGGTTCATCCCGTACTGTA
CATCAGAGAATTCATACAGGAGAGAAACCTTATGAATGTGATATATGTGGGAAAGATTTTAGCCATCATG
CATCACTCACTCAGCATCAAAGAGTACATTCTGGAGAGAAACCGTATGAATGCAAGGAATGTGGGAAAGC
CTTTAGGCAGAATGTACACCTTGTTAGTCATTTGAGAATTCATACTGGTGAAAAACCCTATGAATGTAAA
GAATGTGGAAAAGCTTTTAGAATCAGTTCACAGCTGGCTACTCATCAGAGAATTCATACTGGAGAGAAGC
CTTATGAATGTATTGAATGTGGAAATGCTTTCAAACAGAGATCACACCTTGCCCAACATCAGAAAACTCA
TACAGGAGAGAAACCTTATGAGTGTAATGAATGCGGGAAAGCCTTCAGCCAAACTTCCAATCTTACTCAA
CATCAAAGAATTCATACTGGAGAGAAACCCTATAAATGTACTGAATGTGGAAAGGCTTTTAGTGATAGCT
CATCCTGTGCTCAGCATCAAAGACTCCACACTGGCCAAAGGCCCTATCAGTGTTTTGAATGTGGGAAGGC
GTTCAGAAGAAAGTTATCCTTAATTTGTCATCAAAGAAGTCATACTGGAGAAGAACCTTAA

Translation (626 aa):
MNVEVVKVMPQDLVTFKDVAIDFSQEEWQWMNPAQKRLYRSMMLENYQSLVSLGLCISKPYVISLLEQGR
EPWEMTSEMTRSPFSDWESIYVTQELPLKQFMYDDACMEGITSYGLECSTFEENWKWEDLFEKQMGSHEM
FSKKEIITHKETITKETEFKYTKFGKCIHLENIEESIYNHTSDKKSFSKNSMVIKHKKVYVGKKLFKCNE
CDKTFTHSSSLTVHFRIHTGEKPYACEECGKAFKQRQHLAQHHRTHTGEKLFECKECRKAFKQSEHLIQH
QRIHTGEKPYKCKECRKAFRQPAHLAQHQRIHTGEKPYECKECGKAFSDGSSFARHQRCHTGKRPYECIE
CGKAFRYNTSFIRHWRSYHTGEKPFNCIDCGKAFSVHIGLILHRRIHTGEKPYKCGVCGKTFSSGSSRTV
HQRIHTGEKPYECDICGKDFSHHASLTQHQRVHSGEKPYECKECGKAFRQNVHLVSHLRIHTGEKPYECK
ECGKAFRISSQLATHQRIHTGEKPYECIECGNAFKQRSHLAQHQKTHTGEKPYECNECGKAFSQTSNLTQ
HQRIHTGEKPYKCTECGKAFSDSSSCAQHQRLHTGQRPYQCFECGKAFRRKLSLICHQRSHTGEEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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