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Report for CCDS2858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2858.1 Public Homo sapiens 3 NT5DC2 24 110 108 CCDS HistoryNCBI Gene:64943Re-query CCDS DB by CCDS ID:2858.1Re-query CCDS DB by GeneID:64943See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2858.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307076.8 ENSP00000302468.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000307076.8Link to Ensembl Protein Viewer:ENSP00000302468.4Re-query CCDS DB by Nucleotide ID:ENST00000307076Re-query CCDS DB by Protein ID:ENSP00000302468
Original member Current member NCBI NM_022908.3 NP_075059.1 Accepted alive Link to Nucleotide Sequence:NM_022908.3Link to Protein Sequence:NP_075059.1Re-query CCDS DB by Nucleotide ID:NM_022908Re-query CCDS DB by Protein ID:NP_075059Link to BLAST:NP_075059.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075059.1 520 Q9H857-1 520 100% 0 0

Chromosomal Locations for CCDS 2858.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52524470 52524731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52524817 52524881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52524963 52525103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52525209 52525295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52527294 52527375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52527617 52527718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52527829 52527931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52528013 52528073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52528183 52528311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52528446 52528539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52528637 52528692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52528861 52528935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52529150 52529334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52534533 52534653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGCGAGTGGAGAGCGGTTCTGCGCAGGAAAGAGGAATTTTGTTGGAAAGCCTGTCGACGTTGCTAGAAA
AGACCACAGCATCTCACGAGGGGCGTGCGCCGGGAAACCGGGAGTTGACGGACCTCCTGCCCCCCGAGGT
CTGCAGTCTCCTGAACCCAGCAGCCATCTACGCCAACAACGAGATCAGCCTGCGTGACGTTGAGGTCTAC
GGCTTTGACTACGACTACACCCTGGCCCAGTATGCAGACGCACTGCACCCCGAGATCTTCAGTACCGCCC
GTGACATCCTGATCGAGCACTACAAGTACCCAGAAGGGATTCGGAAGTATGACTACAACCCCAGCTTTGC
CATCCGTGGCCTCCACTATGACATTCAGAAGAGCCTTCTGATGAAGATTGACGCCTTCCACTACGTGCAG
CTGGGGACAGCCTACAGGGGCCTCCAGCCTGTGCCAGACGAGGAGGTGATTGAGCTGTATGGGGGTACCC
AGCACATCCCACTATACCAGATGAGTGGCTTCTATGGCAAGGGTCCCTCCATTAAGCAGTTCATGGACAT
CTTCTCGCTACCGGAGATGGCTCTGCTGTCCTGTGTGGTGGACTACTTTCTGGGCCACAGCCTGGAGTTT
GACCAAGCACATCTCTACAAGGACGTGACGGACGCCATCCGAGACGTGCATGTGAAGGGCCTCATGTACC
AGTGGATCGAGCAGGACATGGAGAAGTACATCCTGAGAGGGGATGAGACGTTTGCTGTCCTGAGCCGCCT
GGTGGCCCATGGGAAACAGCTGTTCCTCATCACCAACAGTCCTTTCAGCTTCGTAGACAAGGGGATGCGG
CACATGGTGGGTCCCGATTGGCGCCAGCTCTTCGATGTGGTCATTGTCCAGGCAGACAAGCCCAGCTTCT
TCACTGACCGGCGCAAGCCTTTCAGAAAACTCGATGAGAAGGGCTCACTTCAGTGGGACCGGATCACCCG
CTTGGAAAAGGGCAAGATCTATCGGCAGGGAAACCTGTTTGACTTCTTACGCTTGACGGAATGGCGTGGC
CCCCGCGTGCTCTACTTCGGGGACCACCTCTATAGTGATCTGGCGGATCTCATGCTGCGGCACGGCTGGC
GCACAGGCGCCATCATCCCCGAGCTGGAGCGTGAGATCCGCATCATCAACACGGAGCAGTACATGCACTC
GCTGACGTGGCAGCAGGCGCTCACGGGGCTGCTGGAGCGCATGCAGACCTATCAGGACGCGGAGTCGAGG
CAGGTGCTGGCTGCCTGGATGAAAGAGCGGCAGGAGCTGAGGTGCATCACCAAGGCCCTGTTCAATGCGC
AGTTCGGCAGCATCTTCCGCACCTTCCACAACCCCACCTACTTCTCAAGGCGCCTCGTGCGCTTCTCTGA
CCTCTACATGGCCTCCCTCAGCTGCCTGCTCAACTACCGCGTGGACTTCACCTTCTACCCACGCCGTACG
CCGCTGCAGCACGAGGCACCCCTCTGGATGGACCAGCTCTGCACCGGCTGCATGAAGACCCCCTTCCTTG
GTGACATGGCCCACATCCGCTGA

Translation (520 aa):
MRVESGSAQERGILLESLSTLLEKTTASHEGRAPGNRELTDLLPPEVCSLLNPAAIYANNEISLRDVEVY
GFDYDYTLAQYADALHPEIFSTARDILIEHYKYPEGIRKYDYNPSFAIRGLHYDIQKSLLMKIDAFHYVQ
LGTAYRGLQPVPDEEVIELYGGTQHIPLYQMSGFYGKGPSIKQFMDIFSLPEMALLSCVVDYFLGHSLEF
DQAHLYKDVTDAIRDVHVKGLMYQWIEQDMEKYILRGDETFAVLSRLVAHGKQLFLITNSPFSFVDKGMR
HMVGPDWRQLFDVVIVQADKPSFFTDRRKPFRKLDEKGSLQWDRITRLEKGKIYRQGNLFDFLRLTEWRG
PRVLYFGDHLYSDLADLMLRHGWRTGAIIPELEREIRIINTEQYMHSLTWQQALTGLLERMQTYQDAESR
QVLAAWMKERQELRCITKALFNAQFGSIFRTFHNPTYFSRRLVRFSDLYMASLSCLLNYRVDFTFYPRRT
PLQHEAPLWMDQLCTGCMKTPFLGDMAHIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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