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Report for CCDS24948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24948.1 Public Mus musculus 11 Cxcl16 23 108 98 CCDS HistoryNCBI Gene:66102Re-query CCDS DB by CCDS ID:24948.1Re-query CCDS DB by GeneID:66102See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019064.8 ENSMUSP00000019064.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019064.8Link to Ensembl Protein Viewer:ENSMUSP00000019064.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000019064Re-query CCDS DB by Protein ID:ENSMUSP00000019064
Original member Current member NCBI NM_023158.7 NP_075647.3 Accepted alive Link to Nucleotide Sequence:NM_023158.7Link to Protein Sequence:NP_075647.3Re-query CCDS DB by Nucleotide ID:NM_023158Re-query CCDS DB by Protein ID:NP_075647Link to BLAST:NP_075647.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075647.3 246 Q8BSU2 246 100% 0 0

Chromosomal Locations for CCDS 24948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70455404 70455444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70455655 70456062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70458745 70458827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70459029 70459167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70459378 70459447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGAGGCGGGGCTTTGGACCCTTGTCTCTTGCGTTCTTCCTTTTCTTGTTGGCGCTGCTGACCCTGCCAG
GCGATGGCAACCAGGGCAGTGTCGCTGGAAGTTGTTCTTGTGATCGTACCATTTCTTCTGGCACCCAGAT
ACCGCAGGGTACTTTGGATCACATCCGAAAATACCTGAAAGCATTTCATCGTTGTCCATTCTTTATCAGG
TTCCAGTTGCAGTCCAAAAGCGTGTGTGGGGGAAGCCAAGACCAGTGGGTCCGTGAACTAGTGGACTGCT
TTGAGCGCAAAGAGTGTGGAACTGGTCATGGGAAGAGTTTTCACCACCAAAAACATTTGCCTCAAGCCAG
TACCCAGACCCCTGAGGCCGCAGAGGGGACACCTTCGGACACGAGCACCCCTGCACATAGTCAGAGCACT
CAGCACTCCACTCTTCCATCAGGAGCACTGTCCTTAAACAAAGAGCACACCCAACCCTGGGAGATGACCA
CTCTCCCTTCAGGCTATGGTCTGGAAGCTAGGCCTGAGGCTGAGGCAAATGAGAAACAGCAAGATGACAG
ACAGCAAGAAGCACCAGGAGCTGGAGCTAGCACACCAGCTTGGGTACCGGTGCTGTCCCTCCTGGCCATT
GTCTTCTTCCTCACTGCAGCCATGGCCTATGTGCTGTGCAACAGGAGAGCGACACAGCAGAACTCTGCAG
GTTTGCAGCTCTGGTACACTCCTGTTGAACCAAGACCCTAG

Translation (246 aa):
MRRGFGPLSLAFFLFLLALLTLPGDGNQGSVAGSCSCDRTISSGTQIPQGTLDHIRKYLKAFHRCPFFIR
FQLQSKSVCGGSQDQWVRELVDCFERKECGTGHGKSFHHQKHLPQASTQTPEAAEGTPSDTSTPAHSQST
QHSTLPSGALSLNKEHTQPWEMTTLPSGYGLEARPEAEANEKQQDDRQQEAPGAGASTPAWVPVLSLLAI
VFFLTAAMAYVLCNRRATQQNSAGLQLWYTPVEPRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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