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Report for CCDS8679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8679.1 Public Homo sapiens 12 RERGL 24 110 108 CCDS HistoryNCBI Gene:79785Re-query CCDS DB by CCDS ID:8679.1Re-query CCDS DB by GeneID:79785See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8679.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229002.6 ENSP00000229002.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000229002.6Link to Ensembl Protein Viewer:ENSP00000229002.2Re-query CCDS DB by Nucleotide ID:ENST00000229002Re-query CCDS DB by Protein ID:ENSP00000229002
Original member Current member NCBI NM_024730.4 NP_079006.1 Accepted alive Link to Nucleotide Sequence:NM_024730.4Link to Protein Sequence:NP_079006.1Re-query CCDS DB by Nucleotide ID:NM_024730Re-query CCDS DB by Protein ID:NP_079006Link to BLAST:NP_079006.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079006.1 205 Q9H628 205 100% 0 0

Chromosomal Locations for CCDS 8679.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 18081191 18081473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 18084517 18084665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 18085620 18085693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 18088900 18088956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 18089229 18089283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGTCAAACTTCTTGCATCTCAAATATAATGAGAAATCTGTTTCTGTTACAAAAGCCCTTACAGTGAGGT
TTCTTACTAAGCGATTCATTGGAGAATATGCTTCTAATTTTGAATCTATCTATAAGAAGCACTTGTGTTT
GGAAAGGAAACAACTAAATCTAGAAATATATGACCCTTGTTCTCAAACACAGAAAGCAAAATTCTCCCTC
ACAAGTGAGCTTCACTGGGCAGATGGGTTTGTTATTGTGTATGACATCAGTGATAGGTCTTCATTTGCTT
TTGCAAAAGCGCTGATCTACAGAATCCGGGAGCCACAAACTAGTCATTGTAAAAGAGCTGTGGAATCAGC
AGTGTTTTTGGTTGGCAACAAACGAGATCTTTGTCATGTGCGAGAGGTTGGCTGGGAAGAAGGGCAAAAG
CTGGCACTGGAAAACCGATGCCAATTCTGTGAACTGTCTGCAGCAGAGCAGTCTCTGGAGGTGGAAATGA
TGTTTATCAGAATTATCAAGGACATCCTGATAAACTTCAAACTCAAAGAAAAGAGACGTCCCAGTGGATC
TAAATCAATGGCCAAATTGATCAATAATGTATTTGGAAAGAGAAGGAAATCTGTTTAG

Translation (205 aa):
MSNFLHLKYNEKSVSVTKALTVRFLTKRFIGEYASNFESIYKKHLCLERKQLNLEIYDPCSQTQKAKFSL
TSELHWADGFVIVYDISDRSSFAFAKALIYRIREPQTSHCKRAVESAVFLVGNKRDLCHVREVGWEEGQK
LALENRCQFCELSAAEQSLEVEMMFIRIIKDILINFKLKEKRRPSGSKSMAKLINNVFGKRRKSV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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