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Report for CCDS10577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10577.1 Public Homo sapiens 16 TMC5 24 110 108 CCDS HistoryNCBI Gene:79838Re-query CCDS DB by CCDS ID:10577.1Re-query CCDS DB by GeneID:79838See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10577.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000219821.9 ENSP00000219821.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000219821.9Link to Ensembl Protein Viewer:ENSP00000219821.5Re-query CCDS DB by Nucleotide ID:ENST00000219821Re-query CCDS DB by Protein ID:ENSP00000219821
Original member Current member NCBI NM_024780.5 NP_079056.2 Accepted alive Link to Nucleotide Sequence:NM_024780.5Link to Protein Sequence:NP_079056.2Re-query CCDS DB by Nucleotide ID:NM_024780Re-query CCDS DB by Protein ID:NP_079056Link to BLAST:NP_079056.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079056.2 760 Q6UXY8-3 760 100% 0 0

Chromosomal Locations for CCDS 10577.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 19456707 19457016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19460235 19460334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19463280 19463367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19463776 19464024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19466082 19466233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19469681 19469825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19472088 19472243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19474125 19474276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19477440 19477518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19479431 19479528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19481370 19481465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19486945 19487020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19487193 19487326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19490395 19490568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19492150 19492228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19494262 19494366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19497121 19497163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19497920 19497966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2283 nt):
ATGCTGTCCGATGACCACGTGAATGAAATCATCATACAGGTTGAGAATGTTTCCTCTGGGGTCCAAAGCC
ACCCATCCTCAAATCAGATTTTTCAAGAAAAGGTGCTGCTAGACTCAAGCATCAACATGGTTTTGTCAAT
ATCTGACATTGATGTGATAGACTCTCAGACAGTCAGCAAAAGGAATGACCAAAAGGGTAACCAGGTGCTG
CGGTTTTCAACATCTTTGAATGAGTCGATGTCTCAGACCCTTCATAGCCTAGAATGCATGGGCATAGACA
CTCCTGGTTCTTCACATGAAACTGTTCAAGGACAGAAGTTAATCGCATCCCTTATACCCATGACATCCAG
AGACAGAATTAAAGCCATCAGGAACCAGCCAAGGACCATGGAAGAGAAAAGGAACCTTAGGAAAATAGTT
GACAAAGAAAAAAGCAAACAGACCCATCGTATCCTTCAGCTCAATTGCTGTATTCAGTGTCTGAACTCCA
TTTCCCGGGCTTATCGGAGATCCAAGAACAGCCTGTCGGAAATTCTGAATTCCATCAGCCTGTGGCAGAA
GACGCTGAAGATCATTGGAGGCAAGTTTGGAACCAGCGTCCTCTCCTATTTCAACTTTCTGAGATGGCTT
TTGAAGTTCAACATTTTCTCATTCATCCTGAACTTCAGCTTCATCATAATCCCTCAGTTTACCGTGGCCA
AAAAGAACACCCTCCAGTTCACTGGGCTGGAGTTTTTCACTGGGGTGGGTTATTTTAGGGACACAGTGAT
GTACTATGGCTTTTACACCAATTCCACCATCCAGCACGGGAACAGCGGGGCATCCTACAACATGCAGCTG
GCCTACATCTTCACAATCGGAGCATGCTTGACCACCTGCTTCTTCAGTTTGCTGTTCAGCATGGCCAAGT
ATTTCCGGAACAACTTCATTAATCCCCACATTTACTCCGGAGGGATCACCAAGCTGATCTTTTGCTGGGA
CTTCACTGTCACTCATGAAAAAGCTGTGAAGCTAAAACAGAAGAATCTTAGCACTGAGATAAGGGAGAAC
CTGTCAGAGCTCCGTCAGGAGAATTCCAAGTTGACGTTCAATCAGCTGCTGACCCGCTTCTCTGCCTACA
TGGTAGCCTGGGTTGTCTCTACAGGAGTGGCCATAGCCTGCTGTGCAGCCGTTTATTACCTGGCTGAGTA
CAACTTAGAGTTCCTGAAGACACACAGTAACCCTGGGGCGGTGCTGTTACTGCCTTTCGTTGTGTCCTGC
ATTAATCTGGCCGTGCCATGCATCTACTCCATGTTCAGGCTTGTGGAGAGGTACGAGATGCCACGGCACG
AAGTCTACGTTCTCCTGATCCGAAACATCTTTTTGAAAATATCAATCATTGGCATTCTTTGTTACTATTG
GCTCAACACCGTGGCCCTGTCTGGTGAAGAGTGTTGGGAAACCCTCATTGGCCAGGACATCTACCGGCTC
CTTCTGATGGATTTTGTGTTCTCTTTAGTCAATTCCTTCCTGGGGGAGTTTCTGAGGAGAATCATTGGGA
TGCAACTGATCACAAGTCTTGGCCTTCAGGAGTTTGACATTGCCAGGAACGTTCTAGAACTGATCTATGC
ACAAACTCTGGTGTGGATTGGCATCTTCTTCTGCCCCCTGCTGCCCTTTATCCAAATGATTATGCTTTTC
ATCATGTTCTACTCCAAAAATATCAGCCTGATGATGAATTTCCAGCCTCCGAGCAAAGCCTGGCGGGCCT
CACAGATGATGACTTTCTTCATCTTCTTGCTCTTTTTCCCATCCTTCACCGGGGTCTTGTGCACCCTGGC
CATCACCATCTGGAGATTGAAGCCTTCAGCTGACTGTGGCCCTTTTCGAGGTCTGCCTCTCTTCATTCAC
TCCATCTACAGCTGGATCGACACCCTAAGTACACGGCCTGGCTACCTGTGGGTTGTTTGGATCTATCGGA
ACCTCATTGGAAGTGTGCACTTCTTTTTCATCCTCACCCTCATTGTGCTAATCATCACCTATCTTTACTG
GCAGATCACAGAGGGAAGGAAGATTATGATAAGGCTGCTCCATGAGCAGATCATTAATGAGGGCAAAGAT
AAAATGTTCCTGATAGAAAAATTGATCAAGCTGCAGGATATGGAGAAGAAAGCAAACCCCAGCTCACTTG
TTCTGGAAAGGAGAGAGGTGGAGCAACAAGGCTTTTTGCATTTGGGGGAACATGATGGCAGTCTTGACTT
GCGATCTAGAAGATCAGTTCAAGAAGGTAATCCAAGGGCCTGA

Translation (760 aa):
MLSDDHVNEIIIQVENVSSGVQSHPSSNQIFQEKVLLDSSINMVLSISDIDVIDSQTVSKRNDQKGNQVL
RFSTSLNESMSQTLHSLECMGIDTPGSSHETVQGQKLIASLIPMTSRDRIKAIRNQPRTMEEKRNLRKIV
DKEKSKQTHRILQLNCCIQCLNSISRAYRRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWL
LKFNIFSFILNFSFIIIPQFTVAKKNTLQFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSGASYNMQL
AYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGGITKLIFCWDFTVTHEKAVKLKQKNLSTEIREN
LSELRQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVYYLAEYNLEFLKTHSNPGAVLLLPFVVSC
INLAVPCIYSMFRLVERYEMPRHEVYVLLIRNIFLKISIIGILCYYWLNTVALSGEECWETLIGQDIYRL
LLMDFVFSLVNSFLGEFLRRIIGMQLITSLGLQEFDIARNVLELIYAQTLVWIGIFFCPLLPFIQMIMLF
IMFYSKNISLMMNFQPPSKAWRASQMMTFFIFLLFFPSFTGVLCTLAITIWRLKPSADCGPFRGLPLFIH
SIYSWIDTLSTRPGYLWVVWIYRNLIGSVHFFFILTLIVLIITYLYWQITEGRKIMIRLLHEQIINEGKD
KMFLIEKLIKLQDMEKKANPSSLVLERREVEQQGFLHLGEHDGSLDLRSRRSVQEGNPRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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