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Report for CCDS34971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34971.1 Public Homo sapiens 8 ARHGAP39 24 110 108 CCDS HistoryNCBI Gene:80728Re-query CCDS DB by CCDS ID:34971.1Re-query CCDS DB by GeneID:80728See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 34971.1
This CCDS representation lacks full-length human transcript support. Its representation is therefore inferred, but it is supported by paralogous transcripts.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 34971.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377307.7 ENSP00000366522.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377307.7Link to Ensembl Protein Viewer:ENSP00000366522.2Re-query CCDS DB by Nucleotide ID:ENST00000377307Re-query CCDS DB by Protein ID:ENSP00000366522
Original member Current member NCBI NM_025251.3 NP_079527.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025251.3Link to Protein Sequence:NP_079527.1Re-query CCDS DB by Nucleotide ID:NM_025251Re-query CCDS DB by Protein ID:NP_079527Link to BLAST:NP_079527.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079527.1 1114 Q9C0H5-2 1114 100% 0 0

Chromosomal Locations for CCDS 34971.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144530422 144530616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144530702 144530871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144532305 144532396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144533126 144533325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144534129 144534202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144537721 144537813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144545249 144545810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144547127 144548489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144555560 144555643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144580846 144581277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144605535 144605614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3345 nt):
ATGTCCCAGACGCAGGACTACGAGTGCAGGAGCCATAATGTCGACCTGCCGGAGTCGAGGATTCCAGGGT
CGAACACTCGGTTGGAGTGGGTGGAGATCATCGAACCGCGCACCCGCGAGCGCATGTACGCCAACCTGGT
CACCGGTGAGTGCGTGTGGGACCCGCCGGCCGGCGTCCGCATCAAGCGCACCAGCGAGAACCAGTGGTGG
GAGCTGTTCGACCCCAACACGTCCCGCTTCTACTACTACAATGCCAGCACGCAGCGCACGGTGTGGCACC
GGCCGCAGGGCTGCGACATCATCCCGCTGGCCAAGCTGCAGACGCTGAAGCAGAACACGGAGTCCCCGCG
CGCCTCGGCGGAGAGCAGCCCCGGGCGCGGCAGCAGCGTCAGCCGTGAGGGCAGCACCAGCTCCTCCCTG
GAGCCCGAGCCCGACACTGAGAAAGCGCAGGAGTTGCCAGCGAGGGCCGGGCGGCCCGCGGCGTTTGGGA
CAGTGAAGGAGGACAGCGGCAGCTCTTCACCACCAGGAGTGTTCCTTGAGAAGGACTATGAGATTTACCG
GGATTACAGTGCGGACGGCCAGCTTCTTCACTACAGGACCTCCTCGCTGCGGTGGAACTCGGGCGCCAAA
GAGCGCATGCTCATCAAGGTCGCTGATCGGGAGCCCAGCTTCCTCGCCGCCCAGGGCAATGGCTACGCCC
CAGACGGCCCACCTGGGGTCCGCTCCCGCAGACCCTCCGGCAGCCAGCACTCACCCAGCCTGCAGACCTT
CGCCCCGGAGGCTGACGGCACCATCTTCTTCCCAGAGAGGAGGCCGTCACCCTTCCTGAAGAGGGCCGAG
CTCCCAGGGAGCAGCTCCCCGCTGCTGGCCCAGCCCCGAAAGCCCTCCGGGGACTCGCAGCCCTCCTCCC
CGCGCTATGGCTATGAACCCCCGCTCTACGAGGAGCCCCCAGTGGAGTACCAGGCCCCCATCTACGATGA
GCCCCCCATGGACGTGCAATTCGAGGCTGGCGGGGGCTACCAGGCCGGCTCTCCCCAGCGGTCGCCGGGC
CGTAAGCCCCGGCCGTTCCTCCAGCCCAACAAGCAGGGCCCCCCCTCGCCCTGCCAGCAGCTGGTGCTCA
CCAAGCAGAAGTGTCCCGAGCGCTTCCTGAGCCTGGAGTACAGTCCCGCCGGCAAGGAGTACGTGCGGCA
GCTGGTCTACGTGGAGCAGGCGGGCTCCAGCCCCAAGCTGCGCGCCGGCCCGCGGCACAAGTACGCGCCC
AACCCCGGCGGTGGTTCGTACTCCTTGCAGCCCAGCCCCTGCCTGCTGAGGGACCAGCGCCTGGGCGTCA
AGTCCGGAGACTACAGCACCATGGAGGGACCTGAGCTGCGGCACAGCCAGCCGCCCACGCCGCTGCCACA
GGCCCAGGAGGATGCCATGTCCTGGTCCAGCCAGCAGGACACCCTGTCCTCCACAGGCTACTCCCCGGGC
ACGCGCAAGCGGAAGAGCAGAAAGCCCTCTTTGTGCCAAGCCACCAGCGCCACCCCCACTGAGGGCCCCG
GGGACCTGCTTGTGGAGCAGCCCCTGGCCGAGGAACAGCCCCCGTGCGGGACCAGCCTCGCCCCCGTGAA
GCGAGCGGAAGGTGAGGCCGAAGGGGCGCGGGGCGCGGCCGAGCCCTTCCTGGCGCAGGCTCGGCTGGCC
TGGGAGGCGCAGCAGGCCCACTTCCACATGAAGCAGAGGAGCAGCTGGGACTCCCAGCAGGACGGCTCTG
GCTACGAGAGCGACGGCGCCCTGCCACTGCCCATGCCCGGGCCGGTGGTGCGGGCCTTCAGCGAGGACGA
GGCGCTGGCCCAGCAGGAGAACAGGCACTGGAGGAGGGGCACCTTCGAGAAGCTAGGCTTCCCCCAGATC
CTGCTGGAGAAGAGCGTCTCCGTGCAGACCAACCTGGCCTCACCAGAGCCCTACCTCCACCCCTCACAGT
CTGAGGACCTCGCTGCCTGTGCCCAGTTCGAGAGCAGCCGGCAGAGCCGCAGCGGCGTTCCCAGCTCCAG
CTGCGTCTTCCCCACTTTCACGCTGCGCAAGCCCTCCTCGGAGACGGACATCGAGAACTGGGCCTCCAAG
CACTTCAACAAGCACACGCAGGGCCTCTTCCGGCGGAAGGTGTCCATCGCCAACATGCTGGCCTGGAGCA
GCGAGTCCATCAAGAAGCCCATGATCGTGACAAGCGACCGGCACGTGAAGAAGGAGGCCTGCGAGCTCTT
CAAGCTGATCCAGATGTACATGGGTGACCGGCGGGCCAAGGCCGACCCACTGCACGTGGCCCTGGAGGTG
GCCACCAAGGGCTGGAGCGTGCAGGGCCTGCGGGACGAGCTCTACATCCAGCTGTGCCGGCAGACCACCG
AGAACTTCCGCCTGGAGAGCCTGGCCCGCGGCTGGGAGCTCATGGCCATCTGCCTGGCCTTTTTCCCGCC
CACCCCCAAGTTCCACTCCTACCTGGAAGGCTACATCTACCGGCACATGGACCCCGTCAATGACACTAAA
GTGACACAGCACATAAAAGAGCTCCTGGAAAGAAACACTAAGAAGAAGTCCAAATTGAGAAAGAAACCCA
AGCCTTATGTTGAAGAGCCGGATGGGGTGGCGATAAGCACGTATGCCAAGTACTGTTACCACAAGCTACA
GAAGGCAGCCCTGACCGGGGCCAAGAAGGGGCTGAAGAAGCCCAACGTGGAGGAGATCCGGCATGCCAAG
AACGCCGTGTTCAGCCCGTCCATGTTCGGCAGCGCACTGCAGGAGGTCATGGGCATGCAGAGAGAGCGCT
ACCCCGAGCGCCAGCTGCCCTGGGTGCAGACACGGCTCTCTGAGGAGGTGCTGGCGCTCAACGGTGACCA
GACAGAGGGCATCTTCAGGGTCCCTGGGGACATTGACGAGGTGAATGCCCTGAAGCTGCAGGTGGACCAG
TGGAAGGTGCCCACAGGCCTGGAAGACCCCCACGTCCCTGCGTCCCTGCTGAAGCTGTGGTACCGGGAGC
TGGAGGAGCCCCTGATCCCGCACGAGTTCTACGAGCAGTGCATCGCGCACTACGACAGCCCCGAGGCGGC
GGTGGCCGTGGTGCACGCGCTGCCCCGCATCAACCGCATGGTGCTGTGCTACCTCATCCGCTTCCTGCAG
GTCTTCGTGCAGCCGGCCAACGTCGCGGTCACCAAGATGGATGTCAGCAACCTGGCCATGGTGATGGCGC
CCAACTGCTTGCGCTGCCAGTCCGACGACCCGCGCGTCATCTTCGAGAACACCCGCAAGGAGATGTCCTT
CCTGCGGGTGCTCATCCAGCACCTGGACACCAGCTTCATGGAGGGTGTGCTGTAG

Translation (1114 aa):
MSQTQDYECRSHNVDLPESRIPGSNTRLEWVEIIEPRTRERMYANLVTGECVWDPPAGVRIKRTSENQWW
ELFDPNTSRFYYYNASTQRTVWHRPQGCDIIPLAKLQTLKQNTESPRASAESSPGRGSSVSREGSTSSSL
EPEPDTEKAQELPARAGRPAAFGTVKEDSGSSSPPGVFLEKDYEIYRDYSADGQLLHYRTSSLRWNSGAK
ERMLIKVADREPSFLAAQGNGYAPDGPPGVRSRRPSGSQHSPSLQTFAPEADGTIFFPERRPSPFLKRAE
LPGSSSPLLAQPRKPSGDSQPSSPRYGYEPPLYEEPPVEYQAPIYDEPPMDVQFEAGGGYQAGSPQRSPG
RKPRPFLQPNKQGPPSPCQQLVLTKQKCPERFLSLEYSPAGKEYVRQLVYVEQAGSSPKLRAGPRHKYAP
NPGGGSYSLQPSPCLLRDQRLGVKSGDYSTMEGPELRHSQPPTPLPQAQEDAMSWSSQQDTLSSTGYSPG
TRKRKSRKPSLCQATSATPTEGPGDLLVEQPLAEEQPPCGTSLAPVKRAEGEAEGARGAAEPFLAQARLA
WEAQQAHFHMKQRSSWDSQQDGSGYESDGALPLPMPGPVVRAFSEDEALAQQENRHWRRGTFEKLGFPQI
LLEKSVSVQTNLASPEPYLHPSQSEDLAACAQFESSRQSRSGVPSSSCVFPTFTLRKPSSETDIENWASK
HFNKHTQGLFRRKVSIANMLAWSSESIKKPMIVTSDRHVKKEACELFKLIQMYMGDRRAKADPLHVALEV
ATKGWSVQGLRDELYIQLCRQTTENFRLESLARGWELMAICLAFFPPTPKFHSYLEGYIYRHMDPVNDTK
VTQHIKELLERNTKKKSKLRKKPKPYVEEPDGVAISTYAKYCYHKLQKAALTGAKKGLKKPNVEEIRHAK
NAVFSPSMFGSALQEVMGMQRERYPERQLPWVQTRLSEEVLALNGDQTEGIFRVPGDIDEVNALKLQVDQ
WKVPTGLEDPHVPASLLKLWYRELEEPLIPHEFYEQCIAHYDSPEAAVAVVHALPRINRMVLCYLIRFLQ
VFVQPANVAVTKMDVSNLAMVMAPNCLRCQSDDPRVIFENTRKEMSFLRVLIQHLDTSFMEGVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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