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Report for CCDS44141.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44141.1 Public Homo sapiens 1 DMRTA2 24 110 108 CCDS HistoryNCBI Gene:63950Re-query CCDS DB by CCDS ID:44141.1Re-query CCDS DB by GeneID:63950See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44141.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000404795.4 ENSP00000383909.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000404795.4Link to Ensembl Protein Viewer:ENSP00000383909.3Re-query CCDS DB by Nucleotide ID:ENST00000404795Re-query CCDS DB by Protein ID:ENSP00000383909
Original member Current member EBI ENST00000418121.5 ENSP00000399370.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000418121.5Link to Ensembl Protein Viewer:ENSP00000399370.1Re-query CCDS DB by Nucleotide ID:ENST00000418121Re-query CCDS DB by Protein ID:ENSP00000399370
Original member Current member NCBI NM_032110.3 NP_115486.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032110.3Link to Protein Sequence:NP_115486.1Re-query CCDS DB by Nucleotide ID:NM_032110Re-query CCDS DB by Protein ID:NP_115486Link to BLAST:NP_115486.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115486.1 542 Q96SC8 542 100% 0 0

Chromosomal Locations for CCDS 44141.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 50418665 50419734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 50420978 50421536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1629 nt):
ATGGAGCTGCGCTCGGAGCTGCCCAGCGTGCCCGGCGCGGCGACGGCGGCGGCGGCAACAGCGACGGGGC
CGCCTGTGGCGTCGGTGGCGTCGGTGGCGGCAGCCGCGGCGGCCGCTGCATCGCTACCGGTGAGCGTGGC
AGGCGGCTTGCTGCGGGGGCCGCCACTGTTGCTGCGGGCAGCCGAGAAGTACCCGCGGACCCCCAAGTGC
GCGCGCTGTCGCAACCATGGCGTGGTGTCGGCCCTCAAGGGCCACAAACGCTACTGTCGCTGGAAGGACT
GCCTGTGCGCCAAGTGCACGCTCATCGCGGAGCGCCAGCGTGTCATGGCGGCGCAGGTGGCGCTGCGCAG
GCAGCAGGCGCAGGAGGAGAACGAGGCGCGCGAGCTGCAGCTGCTCTACGGCACTGCCGAGGGGCTGGCG
CTGGCCGCCGCCAACGGCATCATCCCCCCGAGGCCCGCCTACGAGGTCTTCGGTTCAGTGTGCGCCGCCG
ACGGCGGGGGACCTGGAGCGGGAGCGCCCGCGGGGACCGGAGGCGGAGCAGCTGGCGCAGGGGGCTCAGA
GGCCAAGTTGCAGAAGTTTGACCTGTTTCCTAAGACGCTGCTGCAGGCAGGCCGCCCGGGCAGCCCGCTG
CCGCCGCCGGTGAAGCCCTTATCACCCGACGGCGCAGACTCGGGGCCCGGGACGTCGTCCCCAGAGGTGC
GGCCCGGCTCAGGCTCGGAGAACGGCGATGGCGAGTCCTTTTCTGGTTCGCCCCTAGCTCGGGCCTCCAA
AGAGGCAGGTGGCAGCTGCCCAGGCAGCGCTGGCCCTGGCGGCGGCGGCGAGGAGGACAGCCCGGGCTCC
GCTAGCCCTCTGGGCTCTGAATCCGGTTCAGAGGCTGACAAAGAAGAGGGTGAGGCCGCGCCGGCGCCAG
GGCTGGGCGGAGGCTCGGGTCCACGGCAGCGGACGCCGCTGGATATCTTGACACGCGTGTTCCCAGGCCA
CCGGCGAGGCGTCCTGGAGCTGGTGTTGCAGGGCTGCGGCGGCGACGTGGTGCAGGCCATCGAGCAGGTG
CTGAACCACCACCGTGGGGGCCTGGCGGCCGGCCTGGGCCCTGCGGCGCCCCCAGATAAGGCCGCCGTGG
GTGCTGCAGCAGCTGCAGACGACGCGTGGCCCAGCCGCGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGC
CGGGGGGCCTGGGCTGCCTGCGCCGCTGCAGGCGGGGCCCGCCGCACCTCCGCACCACAGACCCTTGCTG
GCCGGCGCCATGGCGCCTGGGGCGCTGGGCTCGCTGAGCAGCCGCTCGGCCTTCTCGCCGCTGCAGCCCA
ACGCCAGTCACTTCGGTGCCGACGCGGGCGCCTACCCGCTGGGCGCGCCGCTCGGCCTCAGCCCCCTGCG
CCTGGCCTACTCCGCGGCGGCGGCGCACAGCCGCGGTCTGGCCTTCATGGCGCCCTACTCCACTGCCGGC
TTGGTGCCCACGCTCGGCTTCCGCCCACCCATGGACTACGCCTTTAGCGATCTCATGCGTGACCGCTCGG
CCGCCGCTGCTGCGGCGGTGCACAAGGAGCCGACCTACGGCGGCGGCCTGTACGGGCCTATGGTCAACGG
CGCTCCGGAGAAGCAGTAG

Translation (542 aa):
MELRSELPSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRAAEKYPRTPKC
ARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENEARELQLLYGTAEGLA
LAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPL
PPPVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGS
ASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQV
LNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLL
AGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAAAAHSRGLAFMAPYSTAG
LVPTLGFRPPMDYAFSDLMRDRSAAAAAAVHKEPTYGGGLYGPMVNGAPEKQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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