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Report for CCDS18419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18419.1 Public Mus musculus 4 Bsnd 23 108 98 CCDS HistoryNCBI Gene:140475Re-query CCDS DB by CCDS ID:18419.1Re-query CCDS DB by GeneID:140475See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18419.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054472.3 ENSMUSP00000049563.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054472.3Link to Ensembl Protein Viewer:ENSMUSP00000049563.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000054472Re-query CCDS DB by Protein ID:ENSMUSP00000049563
Original member Current member NCBI NM_080458.2 NP_536706.2 Accepted alive Link to Nucleotide Sequence:NM_080458.2Link to Protein Sequence:NP_536706.2Re-query CCDS DB by Nucleotide ID:NM_080458Re-query CCDS DB by Protein ID:NP_536706Link to BLAST:NP_536706.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536706.2 307 Q8VIM4 307 100% 0 0

Chromosomal Locations for CCDS 18419.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 106485046 106485445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106486584 106486838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106487979 106488070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106491865 106492041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGCTGATGAGAAGACCTTCCGAATCGGCTTCATCGTGCTGGGCCTCTTCCTGCTATCCCTGGGTACAT
TCCTTATGAGCCACGATCGACCCCAGGTCTACGGCACCTTCTATGCCATGGGCAGCGTCATGGTGATCGG
GGGTGTCATCTGGAGCATGTGCCAATGCTATCCTAAGATCACCTTTGTGCCAGCAGACTCTGACTTCCAA
GGCATCTTGTCCCCAAAGGCCCTGAGCCTGCTGGAGACCGGGCTTTCGGAGGTAAAGAGCCCCCAGCCCC
CCTACGTCAGGCTGTGGGAAGAAGCCGCCTATGACCAGAGCCTCCCAGACTTCACTCACATCCAAATGAA
GGTCATGGGCTACAGTGAGGACCCCAGGCCACTGCTGGCCCCCGAGCTGAAGACAGGAGCCAGCAGTGTC
AGGGAAGGCGAGCCTCGTACTGCTCAGGCCTGGATGGAGGCTCCGGTGGTCGTCCATAGAGGGTCAGATG
AGAACGAGGGAGAGAAATCCCATTCTCAGAGCAGCCCTTCAGTGGGTCCCCAAGGCTCTGCACCCTTGGC
CTCATTCCATGACGACCTGGACGTGGGCTCCAGCGAAGGCAGCAGCCTGCAACCATCCCCCAACAGGGAT
GAGCCACACCGGCAGGTGCCCTGGGCCAGCAGGGGTCCACTGGATCGCTTCAGTGACTTTGCTCTGATTG
ACGACACCCCTACATCTGAGGACACGGTCCTGGACGGGCAGGCACGGGAGGCAGCGCTACCCAGAAAGCA
GCAATGGTCCCTGAGGATGAAGGGGGAGACTGTCCAGGCACGCGCAGAAGAACCGGAGCAGGAGGAGGAA
GATCTGTACTACGGGCTGCCAGACAGCCCTGGGAACCCCCTACCCGACAAAGAGTTGGGCTTCGAGCCTG
ACATCCAGGGCTGA

Translation (307 aa):
MADEKTFRIGFIVLGLFLLSLGTFLMSHDRPQVYGTFYAMGSVMVIGGVIWSMCQCYPKITFVPADSDFQ
GILSPKALSLLETGLSEVKSPQPPYVRLWEEAAYDQSLPDFTHIQMKVMGYSEDPRPLLAPELKTGASSV
REGEPRTAQAWMEAPVVVHRGSDENEGEKSHSQSSPSVGPQGSAPLASFHDDLDVGSSEGSSLQPSPNRD
EPHRQVPWASRGPLDRFSDFALIDDTPTSEDTVLDGQAREAALPRKQQWSLRMKGETVQARAEEPEQEEE
DLYYGLPDSPGNPLPDKELGFEPDIQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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