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Report for CCDS9550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9550.1 Public Homo sapiens 14 APEX1 24 110 108 CCDS HistoryNCBI Gene:328Re-query CCDS DB by CCDS ID:9550.1Re-query CCDS DB by GeneID:328See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9550.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216714.8 ENSP00000216714.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000216714.8Link to Ensembl Protein Viewer:ENSP00000216714.3Re-query CCDS DB by Nucleotide ID:ENST00000216714Re-query CCDS DB by Protein ID:ENSP00000216714
Original member Current member EBI ENST00000398030.8 ENSP00000381111.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398030.8Link to Ensembl Protein Viewer:ENSP00000381111.4Re-query CCDS DB by Nucleotide ID:ENST00000398030Re-query CCDS DB by Protein ID:ENSP00000381111
Original member Current member EBI ENST00000555414.5 ENSP00000451979.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000555414.5Link to Ensembl Protein Viewer:ENSP00000451979.1Re-query CCDS DB by Nucleotide ID:ENST00000555414Re-query CCDS DB by Protein ID:ENSP00000451979
Original member Current member NCBI NM_001244249.2 NP_001231178.1 Accepted alive Link to Nucleotide Sequence:NM_001244249.2Link to Protein Sequence:NP_001231178.1Re-query CCDS DB by Nucleotide ID:NM_001244249Re-query CCDS DB by Protein ID:NP_001231178Link to BLAST:NP_001231178.1
Original member Current member NCBI NM_001641.4 NP_001632.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001641.4Link to Protein Sequence:NP_001632.2Re-query CCDS DB by Nucleotide ID:NM_001641Re-query CCDS DB by Protein ID:NP_001632Link to BLAST:NP_001632.2
Original member Current member NCBI NM_080648.3 NP_542379.1 Accepted alive Link to Nucleotide Sequence:NM_080648.3Link to Protein Sequence:NP_542379.1Re-query CCDS DB by Nucleotide ID:NM_080648Re-query CCDS DB by Protein ID:NP_542379Link to BLAST:NP_542379.1
Original member Current member NCBI NM_080649.3 NP_542380.1 Accepted alive Link to Nucleotide Sequence:NM_080649.3Link to Protein Sequence:NP_542380.1Re-query CCDS DB by Nucleotide ID:NM_080649Re-query CCDS DB by Protein ID:NP_542380Link to BLAST:NP_542380.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001231178.1 318 P27695 318 100% 0 0
NP_001632.2 318 P27695 318 100% 0 0
NP_542379.1 318 P27695 318 100% 0 0
NP_542380.1 318 P27695 318 100% 0 0

Chromosomal Locations for CCDS 9550.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20455646 20455703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20455914 20456101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20456668 20456860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20456991 20457508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGCCGAAGCGTGGGAAAAAGGGAGCGGTGGCGGAAGACGGGGATGAGCTCAGGACAGAGCCAGAGGCCA
AGAAGAGTAAGACGGCCGCAAAGAAAAATGACAAAGAGGCAGCAGGAGAGGGCCCAGCCCTGTATGAGGA
CCCCCCAGATCAGAAAACCTCACCCAGTGGCAAACCTGCCACACTCAAGATCTGCTCTTGGAATGTGGAT
GGGCTTCGAGCCTGGATTAAGAAGAAAGGATTAGATTGGGTAAAGGAAGAAGCCCCAGATATACTGTGCC
TTCAAGAGACCAAATGTTCAGAGAACAAACTACCAGCTGAACTTCAGGAGCTGCCTGGACTCTCTCATCA
ATACTGGTCAGCTCCTTCGGACAAGGAAGGGTACAGTGGCGTGGGCCTGCTTTCCCGCCAGTGCCCACTC
AAAGTTTCTTACGGCATAGGCGATGAGGAGCATGATCAGGAAGGCCGGGTGATTGTGGCTGAATTTGACT
CGTTTGTGCTGGTAACAGCATATGTACCTAATGCAGGCCGAGGTCTGGTACGACTGGAGTACCGGCAGCG
CTGGGATGAAGCCTTTCGCAAGTTCCTGAAGGGCCTGGCTTCCCGAAAGCCCCTTGTGCTGTGTGGAGAC
CTCAATGTGGCACATGAAGAAATTGACCTTCGCAACCCCAAGGGGAACAAAAAGAATGCTGGCTTCACGC
CACAAGAGCGCCAAGGCTTCGGGGAATTACTGCAGGCTGTGCCACTGGCTGACAGCTTTAGGCACCTCTA
CCCCAACACACCCTATGCCTACACCTTTTGGACTTATATGATGAATGCTCGATCCAAGAATGTTGGTTGG
CGCCTTGATTACTTTTTGTTGTCCCACTCTCTGTTACCTGCATTGTGTGACAGCAAGATCCGTTCCAAGG
CCCTCGGCAGTGATCACTGTCCTATCACCCTATACCTAGCACTGTGA

Translation (318 aa):
MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVD
GLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPL
KVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGD
LNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGW
RLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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