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Report for CCDS9503.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9503.2 Public Homo sapiens 13 TEX30 24 110 108 CCDS HistoryNCBI Gene:93081Re-query CCDS DB by CCDS ID:9503.2Re-query CCDS DB by GeneID:93081See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 9503.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9503.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376032.9 ENSP00000365200.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376032.9Link to Ensembl Protein Viewer:ENSP00000365200.4Re-query CCDS DB by Nucleotide ID:ENST00000376032Re-query CCDS DB by Protein ID:ENSP00000365200
Original member Current member NCBI NM_138779.5 NP_620134.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138779.5Link to Protein Sequence:NP_620134.3Re-query CCDS DB by Nucleotide ID:NM_138779Re-query CCDS DB by Protein ID:NP_620134Link to BLAST:NP_620134.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620134.3 227 Q5JUR7-1 227 100% 0 0

Chromosomal Locations for CCDS 9503.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 102766401 102766580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102767273 102767478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102768260 102768311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102769311 102769541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102770012 102770026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGAGTCATACAGAGGTTAAATTAAAAATACCTTTTGGAAATAAATTACTAGATGCTGTTTGTTTGGTAC
CTAACAAGAGCTTAACATATGGAATAATTCTTACACATGGAGCATCAGGAGATATGAATCTTCCTCATTT
GATGTCACTGGCATCCCATCTTGCATCTCATGGGTTTTTCTGCCTGAGATTTACCTGTAAAGGCCTTAAT
ATTGTACATAGAATTAAGGCGTATAAATCAGTTTTGAATTACCTGAAGACATCAGGAGAATACAAACTTG
CAGGTGTTTTTCTTGGAGGTCGTTCAATGGGCTCAAGAGCAGCTGCTTCTGTAATGTGTCACATTGAGCC
AGATGATGGTGATGATTTTGTTCGGGGTCTCATTTGTATTTCTTACCCACTGCACCATCCAAAGCAGCAG
CATAAACTCAGAGATGAAGACCTCTTTCGTTTAAAAGAGCCTGTACTGTTTGTGTCAGGCTCAGCAGATG
AAATGTGTGAAAAGAACTTGTTGGAGAAAGTGGCACAGAAAATGCAAGCTCCCCATAAAATCCACTGGAT
TGAGAAGGCAAATCATTCCATGGCAGTGAAAGGACGGTCGACAAATGATGTTTTCAAAGAAATAAATACA
CAGATTTTGTTTTGGATCCAAGAAATTACTGAAATGGACAAGAAATGTCATTAG

Translation (227 aa):
MSHTEVKLKIPFGNKLLDAVCLVPNKSLTYGIILTHGASGDMNLPHLMSLASHLASHGFFCLRFTCKGLN
IVHRIKAYKSVLNYLKTSGEYKLAGVFLGGRSMGSRAAASVMCHIEPDDGDDFVRGLICISYPLHHPKQQ
HKLRDEDLFRLKEPVLFVSGSADEMCEKNLLEKVAQKMQAPHKIHWIEKANHSMAVKGRSTNDVFKEINT
QILFWIQEITEMDKKCH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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