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Report for CCDS12548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12548.1 Public Homo sapiens 19 ZNF546 24 110 108 CCDS HistoryNCBI Gene:339327Re-query CCDS DB by CCDS ID:12548.1Re-query CCDS DB by GeneID:339327See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12548.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347077.9 ENSP00000339823.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000347077.9Link to Ensembl Protein Viewer:ENSP00000339823.3Re-query CCDS DB by Nucleotide ID:ENST00000347077Re-query CCDS DB by Protein ID:ENSP00000339823
Original member Current member NCBI NM_178544.5 NP_848639.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178544.5Link to Protein Sequence:NP_848639.2Re-query CCDS DB by Nucleotide ID:NM_178544Re-query CCDS DB by Protein ID:NP_848639Link to BLAST:NP_848639.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848639.2 836 Q86UE3 836 100% 0 0

Chromosomal Locations for CCDS 12548.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 39998327 39998410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40006096 40006182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40007274 40007400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40008470 40008565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40013665 40015781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2511 nt):
ATGCAGGTGGACCCTCCTCTTCACGGGCCTCCAAATGACTTTCTCATTTTTCAAATCATTCCTCTGCACT
CACTTTCTATAATGCCCCGGTTTCTCTGGATTCTGTGCTTCTCCATGGAGGAAACTCAAGGAGAACTGAC
AAGTTCTTGTGGTTCTAAAACCATGGCCAATGTATCTTTGGCATTTAGGGATGTGTCCATAGACCTCTCC
CAAGAGGAGTGGGAGTGCCTGGACGCTGTGCAGAGGGACTTGTACAAGGATGTGATGTTGGAGAACTACA
GCAACCTGGTCTCACTGGGATATACCATTCCTAAGCCAGATGTGATTACTTTATTGGAGCAAGAGAAAGA
GCCCTGGATAGTAATGAGGGAAGGGACAAGGAATTGGTTCACAGATTTGGAATACAAGTATATTACCAAG
AATTTGCTTTCAGAAAAGAATGTTTGCAAAATCTATTTATCTCAATTGCAGACAGGGGAAAAAAGTAAAA
ACACCATCCATGAGGACACCATTTTCAGAAATGGTTTGCAGTGTAAACATGAATTTGAGAGACAAGAGAG
ACATCAGATGGGATGCGTTAGTCAAATGCTAATCCAAAAACAAATATCTCATCCTCTACATCCAAAAATT
CATGCTAGAGAGAAATCATATGAATGTAAGGAATGTAGAAAGGCCTTTAGACAACAGTCATACCTTATTC
AACATCTGAGAATTCACACTGGTGAGAGACCCTATAAATGTATGGAATGTGGAAAGGCCTTTTGTCGAGT
GGGAGACCTTAGAGTACATCACACAATCCATGCTGGGGAGAGACCCTATGAATGTAAAGAATGTGGGAAG
GCCTTTAGACTTCATTATCACCTTACTGAACATCAGAGAATACATTCTGGTGTGAAACCCTACGAGTGTA
AGGAATGTGGGAAAGCCTTTAGTCGTGTTAGAGACCTTAGAGTACATCAGACAATTCATGCTGGAGAGAG
ACCTTATGAATGTAAAGAATGTGGGAAGGCCTTTAGACTTCATTATCAACTAACTGAACATCAAAGAATT
CATACTGGTGAGAGGCCTTATGAATGTAAGGTTTGTGGCAAGACCTTTAGGGTACAACGACATATTAGTC
AACATCAGAAAATTCATACTGGTGTCAAACCCTATAAATGTAATGAATGTGGGAAGGCCTTTAGTCATGG
CTCATACCTTGTTCAACATCAGAAAATTCATACTGGTGAAAAACCCTACGAATGTAAAGAATGTGGTAAG
TCCTTTAGTTTTCATGCAGAACTTGCTCGACATCGTAGAATTCATACTGGTGAGAAACCCTATGAATGTA
GAGAATGTGGAAAAGCCTTTCGTCTTCAAACGGAACTTACTCGGCATCATAGAACTCATACTGGTGAGAA
ACCCTATGAATGTAAGGAATGTGGGAAGGCCTTTATTTGTGGTTATCAACTTACTTTACATCTGAGAACT
CACACCGGTGAGATTCCCTATGAATGTAAGGAATGTGGAAAAACCTTCAGTAGTCGCTATCATCTCACTC
AACACTACAGAATTCATACTGGTGAGAAACCCTACATATGTAACGAATGTGGAAAAGCCTTTCGTCTTCA
AGGAGAACTTACCCGACATCACAGAATTCATACATGTGAGAAACCCTATGAATGTAAGGAATGTGGGAAG
GCTTTTATTCATAGCAATCAATTTATTTCACACCAGCGAATTCACACCAGTGAGAGCACCTACATATGTA
AAGAATGTGGGAAGATTTTTAGTCGTCGCTATAATCTTACTCAACATTTTAAAATTCATACTGGTGAAAA
ACCCTACATATGTAATGAATGTGGGAAAGCCTTTCGATTTCAAACAGAACTTACTCAGCATCACAGAATT
CATACTGGTGAAAAACCCTATAAATGTACAGAATGTGGGAAGGCCTTTATTCGTAGCACTCATCTCACGC
AACATCACAGAATTCATACTGGTGAGAAACCCTACGAATGTACGGAATGTGGGAAGACGTTTAGTCGGCA
CTATCATCTTACTCAACATCACAGAGGCCATACTGGTGAGAAGCCCTACATATGTAATGAATGTGGGAAT
GCTTTTATTTGCAGTTATCGACTTACATTACATCAAAGAATTCACACTGGTGAGCTTCCATATGAATGTA
AGGAATGTGGAAAGACCTTTAGTCGTCGGTATCATCTTACTCAACATTTTAGACTTCATACTGGTGAGAA
ACCTTATAGCTGTAAAGAATGTGGGAATGCCTTTCGTCTTCAAGCAGAACTTACTCGACATCACATAGTT
CACACGGGTGAGAAACCCTATAAATGTAAAGAATGTGGGAAAGCCTTCAGTGTTAATTCAGAACTTACTC
GACATCACAGAATTCATACTGGTGAAAAACCCTATCAATGTAAAGAATGTGGAAAAGCCTTTATTCGTAG
TGATCAACTTACTTTACATCAGAGAAATCATATTAGTGAGGAAGTCCTATGCATAATGTAA

Translation (836 aa):
MQVDPPLHGPPNDFLIFQIIPLHSLSIMPRFLWILCFSMEETQGELTSSCGSKTMANVSLAFRDVSIDLS
QEEWECLDAVQRDLYKDVMLENYSNLVSLGYTIPKPDVITLLEQEKEPWIVMREGTRNWFTDLEYKYITK
NLLSEKNVCKIYLSQLQTGEKSKNTIHEDTIFRNGLQCKHEFERQERHQMGCVSQMLIQKQISHPLHPKI
HAREKSYECKECRKAFRQQSYLIQHLRIHTGERPYKCMECGKAFCRVGDLRVHHTIHAGERPYECKECGK
AFRLHYHLTEHQRIHSGVKPYECKECGKAFSRVRDLRVHQTIHAGERPYECKECGKAFRLHYQLTEHQRI
HTGERPYECKVCGKTFRVQRHISQHQKIHTGVKPYKCNECGKAFSHGSYLVQHQKIHTGEKPYECKECGK
SFSFHAELARHRRIHTGEKPYECRECGKAFRLQTELTRHHRTHTGEKPYECKECGKAFICGYQLTLHLRT
HTGEIPYECKECGKTFSSRYHLTQHYRIHTGEKPYICNECGKAFRLQGELTRHHRIHTCEKPYECKECGK
AFIHSNQFISHQRIHTSESTYICKECGKIFSRRYNLTQHFKIHTGEKPYICNECGKAFRFQTELTQHHRI
HTGEKPYKCTECGKAFIRSTHLTQHHRIHTGEKPYECTECGKTFSRHYHLTQHHRGHTGEKPYICNECGN
AFICSYRLTLHQRIHTGELPYECKECGKTFSRRYHLTQHFRLHTGEKPYSCKECGNAFRLQAELTRHHIV
HTGEKPYKCKECGKAFSVNSELTRHHRIHTGEKPYQCKECGKAFIRSDQLTLHQRNHISEEVLCIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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