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Report for CCDS57043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57043.1 Public Mus musculus 17 Dynlt1f 23 108 98 CCDS HistoryNCBI Gene:100040531Re-query CCDS DB by CCDS ID:57043.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57043.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179554.2 ENSMUSP00000135978.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179554.2Link to Ensembl Protein Viewer:ENSMUSP00000135978.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179554Re-query CCDS DB by Protein ID:ENSMUSP00000135978
Original member Current member NCBI NM_001166627.1 NP_001160099.1 Accepted alive Link to Nucleotide Sequence:NM_001166627.1Link to Protein Sequence:NP_001160099.1Re-query CCDS DB by Nucleotide ID:NM_001166627Re-query CCDS DB by Protein ID:NP_001160099Link to BLAST:NP_001160099.1

Chromosomal Locations for CCDS 57043.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 6649267 6649337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6649687 6649764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6650103 6650226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6653311 6653352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6655774 6655800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGGAAGACTTCCAGGCCTCCGAGGAGACTGCATTTGTTGTTGATGAAGTGAGCAGCATTGTAAAGGAGG
CTATAGAAAGCGCCATCGGTGGTAATGCCTACCAGCACAGCAAAGTCAACCAGTGGACCACTAATGTCCT
AGAACAGACTTTGAGCCAACTCACCAAACTGGGGAGACCATTTAAATACATTGTGACCTGTGTGATCATG
CAGAAGAACGGTGCTGGGTTACACTCCGCAAGTTCCTGCTTCTGGGACAGCTCCACAGACGGAAGCTGCA
CAGTCCGATGGGAGAACAAGACCATGTACTGCATCGTCAGTACCTTCGGACTGTCCATCTGA

Translation (113 aa):
MEDFQASEETAFVVDEVSSIVKEAIESAIGGNAYQHSKVNQWTTNVLEQTLSQLTKLGRPFKYIVTCVIM
QKNGAGLHSASSCFWDSSTDGSCTVRWENKTMYCIVSTFGLSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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