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Report for CCDS55176.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55176.1 Public Homo sapiens 7 CTAGE4 24 110 108 CCDS HistoryNCBI Gene:100128553Re-query CCDS DB by CCDS ID:55176.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55176.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000486333.2 ENSP00000419539.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000486333.2Link to Ensembl Protein Viewer:ENSP00000419539.1Re-query CCDS DB by Nucleotide ID:ENST00000486333Re-query CCDS DB by Protein ID:ENSP00000419539
Original member Current member NCBI NM_198495.3 NP_940897.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198495.3Link to Protein Sequence:NP_940897.2Re-query CCDS DB by Nucleotide ID:NM_198495Re-query CCDS DB by Protein ID:NP_940897Link to BLAST:NP_940897.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940897.2 777 Q8IX94 777 100% 0 0

Chromosomal Locations for CCDS 55176.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 144183504 144185837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2334 nt):
ATGGAGGAGCCTGGTGCTACCCCTCAGCCCTACCTGGGGCTGGTCCTGGAGGAGCTACGCAGAGTTGTGG
CA
GCACTACCTGAGAGTATGAGACCAGATGAGAATCCTTATGGTTTTCCATCGGAACTGGTGGTATGTGC
A
GCTGTTATTGGATTTTTTGTTGTTCTCCTTTTTTTGTGGAGAAGTTTTAGATCGGTTAGGAGTCGGCTT
TAC
GTGGGAAGAGAGCAAAAACTTGGTGCAACGCTTTCTGGACTAATTGAAGAAAAATGTAAACTACTTG
AA
AAGTTTAGCCTTATTCAAAAAGAGTATGAAGGCTATGAAGTAGAGTCATCTTTAGAGGATGCCAGCTT
T
GAGAAGGCGGCAGCAGAAGAAGCACGAAGTTTGGAGGCAACCTGTGAAAAGCTGAACAGGTCCAATTCT
GAA
CTTGAGGATGAAATCCTCTGTCTAGAAAAAGACTTAAAAGAAGAGAAATCTAAACATTCTCAACAAG
AT
GAATTGATGGCGGATATTTCAAAAAGTATACAGTCTCTAGAAGATGAGTCAAAATCCCTCAAATCACA
A
ATAGCTGAAGCCAAAATCATCTGCAAGACATTTAAAATGAGTGAAGAACGACGGGCTATAGCAATAAAA
GAT
GCTTTGAATGAAAATTCTCAACTTCAGACAAGCCATAAACAGCTTTTTCAGCAAGAAGCTGAAGTAT
GG
AAAGGAGAAGTGAGTGAACTTAATAAACAGAAAATAACATTTGAAGACTCCAAAGTGCACGCAGAACA
A
GTTCTGAATGATAAAGAAAATCACATCAAGACCCTGACTGGACACTTGCCAATGATGAAAGATCAGGCT
GCT
GTGCTTGAAGAAGACACAACGGATGATGATAACCTGGAATTAGAAGTGAACAGTCAATGGGAAAATG
GT
GCTAACTTAGATGATCCTCTGAAAGGAGCTTTGAAGAAACTGATTCATGCTGCTAAGTTAAATGTTTC
T
TTAAAAAGCTTAGAAGGAGAAAGAAACCACATTATTATTCAGTTATCTGAAGTGGACAAAACAAAGGAA
GAG
CTTACAGAGCATATTAAAAATCTTCAGACTCAACAAGCATCTTTGCAATCAGAAAACATATATTTTG
AA
AGTGAGAATCAGAAGCTTCAACAGAAACTTAAAATAATGACTGAATTCTATCAAGAAAATGAAATGAA
A
CTCTACAGGAAATTAACAGTGGAGGAAAATTACCGAATAGAGGAAGAAGAGAAGCTTTCTAGAGTGGAA
GAA
AAGATCAGCCGTGCCACTGAAGGGCTGGAGACCTATAGAAAGCTAGCCAAAGATCTTGAAGAAGAAT
TG
GAGAGAACTGTTCATTTTTATCAAAAGCAGGTTATTTCCTACGAGAAAAGAGGACATGATAATTGGTT
G
GCAGCTCGGACTGCTGAAAGAAACCTCAGTGATTTAAGGAAAGAAAATGCTCACAACAAACAAAAATTA
ACT
GAAACAGAGTTGAAATTTGAACTTTTAGAAAAAGATCCTAATGCACTCGATGTTTCAAATACAGCAT
TT
GGCAGAGAGCATTCCCCATGTAGTCCCTCACCATTGGGTCGGCCTTCATCTGAAACGAGAGCTTTTCC
C
TCTCCTCAAACTTTGTTGGAGGATCCACTCAGACTCTCACCTGTGCTTCCAGGGGGAGGAGGAAGAGGC
CCA
AGCAGCCCAGGGAATCCCCTGGACCATCAGATTACCAATGAAAGAGGAGAACCAAGCTATGACAGGT
TA
ATCGATCCTCACAGGGCTCCTTCTGACACTGGGTCCCTGTCATCTCCGGTGGAACAGGACCGTAGGAT
G
ATGTTTCCTCCACCAGGGCAATCATATCCTGATTCAACTCTTCCTCCACAAAGGGAAGACAGATTTTAT
TCT
AATTCTGAAAGACTGTCTGGACCAGCAGAACCCAGAAGTTTTAAAATGACTTCTTTGGATAAAATGG
AT
AGGTCAATGCCTTCAGAAATGGAATCCAGTAGAAATGATGCCAAAGATGATCTTGGTAATTTAAATGT
G
CCTGATTCATCTCTCCCTGCTGAAAATGAAGCAACTGGCCCTGGCCTTATTCCTCCACCTCTTGCTCCA
ATC
AGCGGTCCATTGTTTCCAGTGGATACAAGGGGCCCGTTCATGAGAAGAGGACCTCCTTTCCCCCCAC
CT
CCTCCAGGAACCATGTTTGGAGCTTCTCGAGGTTATTTTCCACCAAGGGATTTCCCAGGTCCACCACA
T
GCTCCATTTGCAATGAGAAACATCTATCCACCGAGGGGTTTACCTCCTTACCTTCATCCGAGACCTGGA
TTT
TACCCCAACCCCACATTCTGA


Translation (777 aa):
MEEPGATPQPYLGLVLEELRRVVAALPESMRPDENPYGFPSELVVCAAVIGFFVVLLFLWRSFRSVRSRL
Y
VGREQKLGATLSGLIEEKCKLLEKFSLIQKEYEGYEVESSLEDASFEKAAAEEARSLEATCEKLNRSNS
E
LEDEILCLEKDLKEEKSKHSQQDELMADISKSIQSLEDESKSLKSQIAEAKIICKTFKMSEERRAIAIK
D
ALNENSQLQTSHKQLFQQEAEVWKGEVSELNKQKITFEDSKVHAEQVLNDKENHIKTLTGHLPMMKDQA
A
VLEEDTTDDDNLELEVNSQWENGANLDDPLKGALKKLIHAAKLNVSLKSLEGERNHIIIQLSEVDKTKE
E
LTEHIKNLQTQQASLQSENIYFESENQKLQQKLKIMTEFYQENEMKLYRKLTVEENYRIEEEEKLSRVE
E
KISRATEGLETYRKLAKDLEEELERTVHFYQKQVISYEKRGHDNWLAARTAERNLSDLRKENAHNKQKL
T
ETELKFELLEKDPNALDVSNTAFGREHSPCSPSPLGRPSSETRAFPSPQTLLEDPLRLSPVLPGGGGRG
P
SSPGNPLDHQITNERGEPSYDRLIDPHRAPSDTGSLSSPVEQDRRMMFPPPGQSYPDSTLPPQREDRFY
S
NSERLSGPAEPRSFKMTSLDKMDRSMPSEMESSRNDAKDDLGNLNVPDSSLPAENEATGPGLIPPPLAP
I
SGPLFPVDTRGPFMRRGPPFPPPPPGTMFGASRGYFPPRDFPGPPHAPFAMRNIYPPRGLPPYLHPRPG
F
YPNPTF




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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