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Report for CCDS13156.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13156.1 Public Homo sapiens 20 CST8 24 110 108 CCDS HistoryNCBI Gene:10047Re-query CCDS DB by CCDS ID:13156.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13156.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246012.2 ENSP00000246012.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246012.2Link to Ensembl Protein Viewer:ENSP00000246012.1Re-query CCDS DB by Nucleotide ID:ENST00000246012Re-query CCDS DB by Protein ID:ENSP00000246012
Original member Current member NCBI NM_001281730.2 NP_001268659.1 Accepted alive Link to Nucleotide Sequence:NM_001281730.2Link to Protein Sequence:NP_001268659.1Re-query CCDS DB by Nucleotide ID:NM_001281730Re-query CCDS DB by Protein ID:NP_001268659Link to BLAST:NP_001268659.1
Original member Current member NCBI NM_005492.4 NP_005483.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005492.4Link to Protein Sequence:NP_005483.1Re-query CCDS DB by Nucleotide ID:NM_005492Re-query CCDS DB by Protein ID:NP_005483Link to BLAST:NP_005483.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268659.1 142 O60676 142 100% 0 0
NP_005483.1 142 O60676 142 100% 0 0

Chromosomal Locations for CCDS 13156.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 23491668 23491898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23492958 23493071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23495831 23495914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGCCCAGGTGCCGGTGGCTCTCCCTGATCCTCCTCACCATTCCCCTGGCCCTGGTGGCCAGGAAAGACC
CAAAAAAGAATGAGACAGGGGTGCTGAGGAAATTAAAACCCGTCAATGCCTCAAATGCCAACGTGAAGCA
GTGTCTGTGGTTTGCCATGCAAGAATACAACAAAGAGAGCGAGGACAAGTATGTCTTCCTGGTGGTCAAG
ACACTGCAAGCCCAGCTTCAGGTCACAAATCTTCTGGAATACCTTATTGATGTAGAAATTGCCCGCAGCG
ATTGCAGAAAGCCTTTAAGCACTAATGAAATCTGCGCCATTCAAGAAAACTCCAAGCTGAAAAGGAAATT
AAGCTGCAGCTTTTTGGTAGGAGCACTTCCCTGGAATGGTGAATTCACTGTGATGGAGAAAAAGTGTGAA
GATGCTTAA

Translation (142 aa):
MPRCRWLSLILLTIPLALVARKDPKKNETGVLRKLKPVNASNANVKQCLWFAMQEYNKESEDKYVFLVVK
TLQAQLQVTNLLEYLIDVEIARSDCRKPLSTNEICAIQENSKLKRKLSCSFLVGALPWNGEFTVMEKKCE
DA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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