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Report for CCDS52339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52339.1 Public Mus musculus 7 Hbb-bs 23 108 98 CCDS HistoryNCBI Gene:100503605Re-query CCDS DB by CCDS ID:52339.1See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 52339.1
This gene represents the first of two adult-expressed beta-globin genes in the "single" haplotype of the beta-globin cluster (PMID:7237554). The "single" haplotype is found in C57BL/-type strains and includes two highly similar adult beta-globin genes, beta s and beta t, while the "diffuse" haplotype is found in strains such as BALB/c and 129Sv, and includes two somewhat diverse adult beta-globin genes, beta-major and beta-minor. This CCDS is based on primary chromosome 7 of the mouse reference genome assembly, which represents the "single" haplotype.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 52339.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023934.7 ENSMUSP00000023934.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023934.7Link to Ensembl Protein Viewer:ENSMUSP00000023934.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023934Re-query CCDS DB by Protein ID:ENSMUSP00000023934
Original member Current member NCBI NM_001201391.1 NP_001188320.1 Accepted alive Link to Nucleotide Sequence:NM_001201391.1Link to Protein Sequence:NP_001188320.1Re-query CCDS DB by Nucleotide ID:NM_001201391Re-query CCDS DB by Protein ID:NP_001188320Link to BLAST:NP_001188320.1

Chromosomal Locations for CCDS 52339.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103826665 103826793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103827448 103827670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103827784 103827875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGGTGCACCTGACTGATGCTGAGAAGGCTGCTGTCTCTGGCCTGTGGGGAAAGGTGAACGCCGATGAAG
TTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTTGTCTACCCTTGGACCCAGCGGTACTTTGATAGCTTTGG
AGACCTATCCTCTGCCTCTGCTATCATGGGTAATGCCAAAGTGAAGGCCCATGGCAAGAAAGTGATAACT
GCCTTTAACGATGGCCTGAATCACTTGGACAGCCTCAAGGGCACCTTTGCCAGCCTCAGTGAGCTCCACT
GTGACAAGCTGCATGTGGATCCTGAGAACTTCAGGCTCCTGGGCAATATGATCGTGATTGTGCTGGGCCA
CCACCTGGGCAAGGATTTCACCCCCGCTGCACAGGCTGCCTTCCAGAAGGTGGTGGCTGGAGTGGCCGCT
GCCCTGGCTCACAAGTACCACTAA

Translation (147 aa):
MVHLTDAEKAAVSGLWGKVNADEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAKVKAHGKKVIT
AFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLGKDFTPAAQAAFQKVVAGVAA
ALAHKYH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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