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Report for CCDS59086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59086.1 Public Homo sapiens 7 TMEM178B 24 110 108 CCDS HistoryNCBI Gene:100507421Re-query CCDS DB by CCDS ID:59086.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59086.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000565468.6 ENSP00000456594.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000565468.6Link to Ensembl Protein Viewer:ENSP00000456594.1Re-query CCDS DB by Nucleotide ID:ENST00000565468Re-query CCDS DB by Protein ID:ENSP00000456594
Original member Current member NCBI NM_001195278.2 NP_001182207.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001195278.2Link to Protein Sequence:NP_001182207.1Re-query CCDS DB by Nucleotide ID:NM_001195278Re-query CCDS DB by Protein ID:NP_001182207Link to BLAST:NP_001182207.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182207.1 294 H3BS89 294 100% 0 0

Chromosomal Locations for CCDS 59086.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141074311 141074692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141212591 141212704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141437608 141437745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141470536 141470786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGCTGCCGGAAGGTTACTGCTCTACACTGGCCTCTCGCTAGCGCTCTGCGCCCTCGGCATGCTGGCCG
TGGCCATCTGCTCGGACCACTGGTACGAGACGGACGCCAGGAAGCACAGGGACAGGTGCAAGGCCTTCAA
CACCCGCCGGGTCGACCCCGGCTTCATTTACAACAATAACAACAACTTGCCGCTCCGGGCGAGCCGCTCG
CGCCTGGACCGCTGGGAGGGCAAACTCCTCCGGGCCCGGAATCGCCGGCAGCTGTTCGCCATGAGCCCCG
CGGACGAGTGCAGCCGGCAGTACAACTCCACCAACATGGGCCTCTGGAGGAAGTGCCACCGGCAGGGCTT
CGACCCCGAGATCGCCGCCCTCATTCGGAAAGGAGAAATTGAGCGATGTACGTACATCAAATACCACTAC
TCCTCAGCAACCATCCCCAGGAACCTCACTTTCAATATCACGAAGACCATCCGTCAGGATGAGTGGCATG
CCCTACACCTGCGCAGAATGACGGCTGGCTTCATGGGCATGGCGGTGGCCATCATCCTCTTTGGCTGGAT
CATCGGCGTGCTGGGCTGCTGCTGGGACCGAGGCCTTATGCAGTACGTGGCAGGGCTGCTCTTCCTCATG
GGAGGAACCTTCTGCATCATTTCACTGTGCACCTGTGTGGCCGGGATCAACTTTGAGCTGTCACGCTACC
CACGCTACCTGTACGGACTCCCTGATGACATCAGCCATGGCTATGGCTGGTCCATGTTCTGTGCATGGGG
GGGCCTGGGCCTCACACTCATCTCGGGATTCTTCTGTACCTTAGCCCCTTCTGTTCAACCTGTCCCGAGG
ACCAACTACCCTAAATCCAGACCCGAGAATGGGACAGTGTGCTAA

Translation (294 aa):
MAAGRLLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNNNNLPLRASRS
RLDRWEGKLLRARNRRQLFAMSPADECSRQYNSTNMGLWRKCHRQGFDPEIAALIRKGEIERCTYIKYHY
SSATIPRNLTFNITKTIRQDEWHALHLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLM
GGTFCIISLCTCVAGINFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVPR
TNYPKSRPENGTVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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