NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1753.1 Public Homo sapiens 2 NRBP1 24 110 108 CCDS HistoryNCBI Gene:29959Re-query CCDS DB by CCDS ID:1753.1Re-query CCDS DB by GeneID:29959See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1753.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000233557.7 ENSP00000233557.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000233557.7Link to Ensembl Protein Viewer:ENSP00000233557.3Re-query CCDS DB by Nucleotide ID:ENST00000233557Re-query CCDS DB by Protein ID:ENSP00000233557
Original member Current member EBI ENST00000379852.8 ENSP00000369181.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379852.8Link to Ensembl Protein Viewer:ENSP00000369181.3Re-query CCDS DB by Nucleotide ID:ENST00000379852Re-query CCDS DB by Protein ID:ENSP00000369181
Original member Current member NCBI NM_001321357.2 NP_001308286.1 Accepted alive Link to Nucleotide Sequence:NM_001321357.2Link to Protein Sequence:NP_001308286.1Re-query CCDS DB by Nucleotide ID:NM_001321357Re-query CCDS DB by Protein ID:NP_001308286Link to BLAST:NP_001308286.1
Original member Current member NCBI NM_013392.4 NP_037524.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013392.4Link to Protein Sequence:NP_037524.1Re-query CCDS DB by Nucleotide ID:NM_013392Re-query CCDS DB by Protein ID:NP_037524Link to BLAST:NP_037524.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308286.1 535 Q9UHY1 535 100% 0 0
NP_037524.1 535 Q9UHY1 535 100% 0 0

Chromosomal Locations for CCDS 1753.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27433274 27433483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27433673 27433795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27433989 27434090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27434471 27434560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27434722 27434762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27435133 27435227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27436753 27436836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27437047 27437105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27437262 27437360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27439766 27439898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27440403 27440508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27440652 27440702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27440805 27440940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27441127 27441180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27441267 27441330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27441567 27441622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27441708 27441812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGTCGGAGGGGGAGTCCCAGACAGTACTTAGCAGTGGCTCAGACCCAAAGGTAGAATCCTCATCTTCAG
CTCCTGGCCTGACATCAGTGTCACCTCCTGTGACCTCCACAACCTCAGCTGCTTCCCCAGAGGAAGAAGA
AGAAAGTGAAGATGAGTCTGAGATTTTGGAAGAGTCGCCCTGTGGGCGCTGGCAGAAGAGGCGAGAAGAG
GTGAATCAACGGAATGTACCAGGTATTGACAGTGCATACCTGGCCATGGATACAGAGGAAGGTGTAGAGG
TTGTGTGGAATGAGGTACAGTTCTCTGAACGCAAGAACTACAAGCTGCAGGAGGAAAAGGTTCGTGCTGT
GTTTGATAATCTGATTCAATTGGAGCATCTTAACATTGTTAAGTTTCACAAATATTGGGCTGACATTAAA
GAGAACAAGGCCAGGGTCATTTTTATCACAGAATACATGTCATCTGGGAGTCTGAAGCAATTTCTGAAGA
AGACCAAAAAGAACCACAAGACGATGAATGAAAAGGCATGGAAGCGTTGGTGCACACAAATCCTCTCTGC
CCTAAGCTACCTGCACTCCTGTGACCCCCCCATCATCCATGGGAACCTGACCTGTGACACCATCTTCATC
CAGCACAACGGACTCATCAAGATTGGCTCTGTGGCTCCTGACACTATCAACAATCATGTGAAGACTTGTC
GAGAAGAGCAGAAGAATCTACACTTCTTTGCACCAGAGTATGGAGAAGTCACTAATGTGACAACAGCAGT
GGACATCTACTCCTTTGGCATGTGTGCACTGGAGATGGCAGTGCTGGAGATTCAGGGCAATGGAGAGTCC
TCATATGTGCCACAGGAAGCCATCAGCAGTGCCATCCAGCTTCTAGAAGACCCATTACAGAGGGAGTTCA
TTCAAAAGTGCCTGCAGTCTGAGCCTGCTCGCAGACCAACAGCCAGAGAACTTCTGTTCCACCCAGCATT
GTTTGAAGTGCCCTCGCTCAAACTCCTTGCGGCCCACTGCATTGTGGGACACCAACACATGATCCCAGAG
AACGCTCTAGAGGAGATCACCAAAAACATGGATACTAGTGCCGTACTGGCTGAAATCCCTGCAGGACCAG
GAAGAGAACCAGTTCAGACTTTGTACTCTCAGTCACCAGCTCTGGAATTAGATAAATTCCTTGAAGATGT
CAGGAATGGGATCTATCCTCTGACAGCCTTTGGGCTGCCTCGGCCCCAGCAGCCACAGCAGGAGGAGGTG
ACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGACACCTGAACCAGCTGAGGTGGAGACTCGCAAGG
TGGTGCTGATGCAGTGCAACATTGAGTCGGTGGAGGAGGGAGTCAAACACCACCTGACACTTCTGCTGAA
GTTGGAGGACAAACTGAACCGGCACCTGAGCTGTGACCTGATGCCAAATGAGAATATCCCCGAGTTGGCG
GCTGAGCTGGTGCAGCTGGGCTTCATTAGTGAGGCTGACCAGAGCCGGTTGACTTCTCTGCTAGAAGAGA
CCTTGAACAAGTTCAATTTTGCCAGGAACAGTACCCTCAACTCAGCCGCTGTCACCGTCTCCTCTTAG

Translation (535 aa):
MSEGESQTVLSSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESPCGRWQKRREE
VNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFHKYWADIK
ENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTCDTIFI
QHNGLIKIGSVAPDTINNHVKTCREEQKNLHFFAPEYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGES
SYVPQEAISSAIQLLEDPLQREFIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPE
NALEEITKNMDTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRPQQPQQEEV
TSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKLNRHLSCDLMPNENIPELA
AELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVTVSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH