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Report for CCDS2335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2335.1 Public Homo sapiens 2 HYCC2 24 110 108 CCDS HistoryNCBI Gene:285172Re-query CCDS DB by CCDS ID:2335.1Re-query CCDS DB by GeneID:285172See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2335.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000418596.7 ENSP00000393667.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000418596.7Link to Ensembl Protein Viewer:ENSP00000393667.2Re-query CCDS DB by Nucleotide ID:ENST00000418596Re-query CCDS DB by Protein ID:ENSP00000393667
Original member Current member NCBI NM_001321618.1 NP_001308547.1 Accepted alive Link to Nucleotide Sequence:NM_001321618.1Link to Protein Sequence:NP_001308547.1Re-query CCDS DB by Nucleotide ID:NM_001321618Re-query CCDS DB by Protein ID:NP_001308547Link to BLAST:NP_001308547.1
Original member Current member NCBI NM_001321619.2 NP_001308548.1 Accepted alive Link to Nucleotide Sequence:NM_001321619.2Link to Protein Sequence:NP_001308548.1Re-query CCDS DB by Nucleotide ID:NM_001321619Re-query CCDS DB by Protein ID:NP_001308548Link to BLAST:NP_001308548.1
Original member Current member NCBI NM_001321621.2 NP_001308550.1 Accepted alive Link to Nucleotide Sequence:NM_001321621.2Link to Protein Sequence:NP_001308550.1Re-query CCDS DB by Nucleotide ID:NM_001321621Re-query CCDS DB by Protein ID:NP_001308550Link to BLAST:NP_001308550.1
Original member Current member NCBI NM_001321622.2 NP_001308551.1 Accepted alive Link to Nucleotide Sequence:NM_001321622.2Link to Protein Sequence:NP_001308551.1Re-query CCDS DB by Nucleotide ID:NM_001321622Re-query CCDS DB by Protein ID:NP_001308551Link to BLAST:NP_001308551.1
Original member Current member NCBI NM_173822.5 NP_776183.1 Accepted alive Link to Nucleotide Sequence:NM_173822.5Link to Protein Sequence:NP_776183.1Re-query CCDS DB by Nucleotide ID:NM_173822Re-query CCDS DB by Protein ID:NP_776183Link to BLAST:NP_776183.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308547.1 530 Q8IXS8 530 100% 0 0
NP_001308548.1 530 Q8IXS8 530 100% 0 0
NP_001308550.1 530 Q8IXS8 530 100% 0 0
NP_001308551.1 530 Q8IXS8 530 100% 0 0
NP_776183.1 530 Q8IXS8 530 100% 0 0

Chromosomal Locations for CCDS 2335.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 200981270 200981871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200988262 200988421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200992281 200992368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200992887 200993003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200997445 200997540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201008973 201009088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201011392 201011472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201016991 201017170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201022831 201022932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201023959 201024009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGCTGGGAACTGACCGTTGTGTTGTGGAAGAATGGTTATCAGAATTCAAGGCATTACCTGACACTCAGA
TCACCAGTTATGCAGCAACTTTACACCGGAAAAAAACACTTGTACCAGCCCTCTATAAAGTTATTCAAGA
TTCAAATAATGAGCTCCTGGAGCCTGTCTGCCATCAGCTGTTTGAGCTCTATCGTAGCTCAGAGGTTCGA
CTTAAGAGGTTCACACTGCAGTTCTTGCCAGAATTGATGTGGGTTTATTTACGGCTTACAGTTAGCCGAG
ACAGACAGAGTAATGGTTGCATTGAAGCACTTCTGTTAGGAATTTACAATTTGGAAATCGCTGATAAAGA
TGGGAACAATAAAGTTCTGTCTTTCACTATCCCCTCCTTATCCAAGCCTTCAATATACCATGAACCTTCA
ACAATTGGATCCATGGCTTTGACAGAAGGGGCATTGTGTCAGCATGATCTCATCAGAGTTGTTTATAGTG
ATCTTCATCCTCAGAGGGAAACATTCACTGCACAGAACCGGTTTGAAGTCCTGAGTTTTCTCATGCTGTG
TTATAATTCTGCTATTGTATATATGCCTGCCTCATCTTACCAATCTCTTTGTCGGATGGGTTCCAGGGTT
TGTGTGAGTGGCTTTCCACGGCAACATGAAAAACACTGGAAAGAACTCTGTGGTCGAATAGTATTGGATC
CTGAATTTATGGTGCAACTTCTCACAGGGGTTTATTATGCCATGTATAATGGACAGTGGGACCTTGGCCA
GGAAGTTCTTGATGATATCATTTATAGAGCCCAGCTAGAGCTTTTTTCTCAACCACTATTGGTTGCCAAT
GCCATGAAAAACTCATTACCATTTGATGCTCCTGATTCTACACAAGAAGGCCAGAAAGTCCTTAAAGTTG
AAGTCACTCCAACAGTGCCGAGGATTTCTCGGACTGCAATTACAACAGCTTCAATCCGTCGTCATAGATG
GAGAAGAGAAGGTGCTGAGGGTGTAAATGGAGGAGAGGAGTCTGTAAACCTGAATGATGCAGATGAAGGA
TTTTCATCAGGGGCTTCCCTCAGCAGTCAGCCAATTGGGACCAAACCATCCTCCTCTTCTCAGAGGGGAA
GCTTAAGGAAAGTAGCAACTGGGCGTTCAGCCAAGGATAAAGAAACAGCCTCTGCCATCAAATCCAGTGA
GAGCCCTCGAGATTCAGTAGTTCGCAAGCAGTATGTACAGCAACCAACTGATCTTAGTGTAGATTCAGTT
GAGCTGACACCAATGAAGAAACACCTGAGCCTGCCTGCTGGCCAGGTGGTGCCAAAAATCAATAGCTTAA
GTCTAATCCGGACAGCCAGTGCTTCCTCAAGTAAATCATTTGACTATGTAAATGGCAGTCAAGCAAGTAC
CAGCATTGGGGTTGGCACTGAGGGAGGTACTAATTTAGCAGCCAACAATGCTAATCGATACTCAACTGTC
AGTCTGCAGGAAGACCGGCTAGGTCAAGCTGGCGAAGGTAAAGAGCTCCTCAGCCCAGGAGCCCCCTTGA
CCAAGCAGTCTCGATCCCCAAGTTTCAATATGCAGCTAATATCCCAGGTGTAG

Translation (530 aa):
MLGTDRCVVEEWLSEFKALPDTQITSYAATLHRKKTLVPALYKVIQDSNNELLEPVCHQLFELYRSSEVR
LKRFTLQFLPELMWVYLRLTVSRDRQSNGCIEALLLGIYNLEIADKDGNNKVLSFTIPSLSKPSIYHEPS
TIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEVLSFLMLCYNSAIVYMPASSYQSLCRMGSRV
CVSGFPRQHEKHWKELCGRIVLDPEFMVQLLTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPLLVAN
AMKNSLPFDAPDSTQEGQKVLKVEVTPTVPRISRTAITTASIRRHRWRREGAEGVNGGEESVNLNDADEG
FSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSV
ELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNGSQASTSIGVGTEGGTNLAANNANRYSTV
SLQEDRLGQAGEGKELLSPGAPLTKQSRSPSFNMQLISQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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