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Report for CCDS12859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12859.1 Public Homo sapiens 19 ZNF160 24 110 108 CCDS HistoryNCBI Gene:90338Re-query CCDS DB by CCDS ID:12859.1Re-query CCDS DB by GeneID:90338See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12859.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429604.5 ENSP00000406201.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429604.5Link to Ensembl Protein Viewer:ENSP00000406201.1Re-query CCDS DB by Nucleotide ID:ENST00000429604Re-query CCDS DB by Protein ID:ENSP00000406201
Original member Current member EBI ENST00000418871.5 ENSP00000409597.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000418871.5Link to Ensembl Protein Viewer:ENSP00000409597.1Re-query CCDS DB by Nucleotide ID:ENST00000418871Re-query CCDS DB by Protein ID:ENSP00000409597
Original member Current member EBI ENST00000599056.5 ENSP00000470961.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000599056.5Link to Ensembl Protein Viewer:ENSP00000470961.1Re-query CCDS DB by Nucleotide ID:ENST00000599056Re-query CCDS DB by Protein ID:ENSP00000470961
Original member Current member EBI ENST00000683776.1 ENSP00000507845.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683776.1Link to Ensembl Protein Viewer:ENSP00000507845.1Re-query CCDS DB by Nucleotide ID:ENST00000683776Re-query CCDS DB by Protein ID:ENSP00000507845
Original member Current member NCBI NM_001102603.2 NP_001096073.1 Accepted alive Link to Nucleotide Sequence:NM_001102603.2Link to Protein Sequence:NP_001096073.1Re-query CCDS DB by Nucleotide ID:NM_001102603Re-query CCDS DB by Protein ID:NP_001096073Link to BLAST:NP_001096073.1
Original member Current member NCBI NM_001322128.2 NP_001309057.1 Accepted alive Link to Nucleotide Sequence:NM_001322128.2Link to Protein Sequence:NP_001309057.1Re-query CCDS DB by Nucleotide ID:NM_001322128Re-query CCDS DB by Protein ID:NP_001309057Link to BLAST:NP_001309057.1
Original member Current member NCBI NM_001322129.2 NP_001309058.1 Accepted alive Link to Nucleotide Sequence:NM_001322129.2Link to Protein Sequence:NP_001309058.1Re-query CCDS DB by Nucleotide ID:NM_001322129Re-query CCDS DB by Protein ID:NP_001309058Link to BLAST:NP_001309058.1
Original member Current member NCBI NM_001322130.2 NP_001309059.1 Accepted alive Link to Nucleotide Sequence:NM_001322130.2Link to Protein Sequence:NP_001309059.1Re-query CCDS DB by Nucleotide ID:NM_001322130Re-query CCDS DB by Protein ID:NP_001309059Link to BLAST:NP_001309059.1
Original member Current member NCBI NM_001322131.2 NP_001309060.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001322131.2Link to Protein Sequence:NP_001309060.1Re-query CCDS DB by Nucleotide ID:NM_001322131Re-query CCDS DB by Protein ID:NP_001309060Link to BLAST:NP_001309060.1
Original member Current member NCBI NM_001322132.2 NP_001309061.1 Accepted alive Link to Nucleotide Sequence:NM_001322132.2Link to Protein Sequence:NP_001309061.1Re-query CCDS DB by Nucleotide ID:NM_001322132Re-query CCDS DB by Protein ID:NP_001309061Link to BLAST:NP_001309061.1
Original member Current member NCBI NM_001322133.2 NP_001309062.1 Accepted alive Link to Nucleotide Sequence:NM_001322133.2Link to Protein Sequence:NP_001309062.1Re-query CCDS DB by Nucleotide ID:NM_001322133Re-query CCDS DB by Protein ID:NP_001309062Link to BLAST:NP_001309062.1
Original member Current member NCBI NM_001322134.2 NP_001309063.1 Accepted alive Link to Nucleotide Sequence:NM_001322134.2Link to Protein Sequence:NP_001309063.1Re-query CCDS DB by Nucleotide ID:NM_001322134Re-query CCDS DB by Protein ID:NP_001309063Link to BLAST:NP_001309063.1
Original member Current member NCBI NM_001322135.2 NP_001309064.1 Accepted alive Link to Nucleotide Sequence:NM_001322135.2Link to Protein Sequence:NP_001309064.1Re-query CCDS DB by Nucleotide ID:NM_001322135Re-query CCDS DB by Protein ID:NP_001309064Link to BLAST:NP_001309064.1
Original member Current member NCBI NM_001322136.1 NP_001309065.1 Accepted alive Link to Nucleotide Sequence:NM_001322136.1Link to Protein Sequence:NP_001309065.1Re-query CCDS DB by Nucleotide ID:NM_001322136Re-query CCDS DB by Protein ID:NP_001309065Link to BLAST:NP_001309065.1
Original member Current member NCBI NM_033288.4 NP_150630.2 Accepted alive Link to Nucleotide Sequence:NM_033288.4Link to Protein Sequence:NP_150630.2Re-query CCDS DB by Nucleotide ID:NM_033288Re-query CCDS DB by Protein ID:NP_150630Link to BLAST:NP_150630.2
Original member Current member NCBI NM_198893.3 NP_942596.1 Accepted alive Link to Nucleotide Sequence:NM_198893.3Link to Protein Sequence:NP_942596.1Re-query CCDS DB by Nucleotide ID:NM_198893Re-query CCDS DB by Protein ID:NP_942596Link to BLAST:NP_942596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096073.1 818 Q9HCG1-1 818 100% 0 0
NP_001309057.1 818 Q9HCG1-1 818 100% 0 0
NP_001309058.1 818 Q9HCG1-1 818 100% 0 0
NP_001309059.1 818 Q9HCG1-1 818 100% 0 0
NP_001309060.1 818 Q9HCG1-1 818 100% 0 0
NP_001309061.1 818 Q9HCG1-1 818 100% 0 0
NP_001309062.1 818 Q9HCG1-1 818 100% 0 0
NP_001309063.1 818 Q9HCG1-1 818 100% 0 0
NP_001309064.1 818 Q9HCG1-1 818 100% 0 0
NP_001309065.1 818 Q9HCG1-1 818 100% 0 0
NP_150630.2 818 Q9HCG1-1 818 100% 0 0
NP_942596.1 818 Q9HCG1-1 818 100% 0 0

Chromosomal Locations for CCDS 12859.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 53068077 53070262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53074140 53074268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53075057 53075183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53086262 53086276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2457 nt):
ATGGCCCTTACTCAGGTACGGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAAT
GCCTGGACCCTGCTCAGAGGATCTTATACAGGGACGTGATGTTGGAGAACTACTGGAACCTTGTTTCTCT
GGGACTGTGTCATTTTGATATGAATATTATCTCCATGTTGGAGGAAGGGAAAGAGCCCTGGACTGTGAAG
AGCTGTGTGAAAATAGCAAGAAAACCAAGAACGCCGGAATGTGTCAAAGGCGTGGTCACAGATATCCCTC
CTAAATGTACAATCAAGGATTTGCTACCAAAAGAGAAGAGCAGTACAGAAGCAGTATTCCACACAGTGGT
GTTGGAAAGACACGAAAGCCCTGACATTGAAGACTTTTCCTTCAAGGAACCCCAGAAAAATGTGCATGAT
TTTGAGTGTCAATGGAGAGATGACACAGGAAATTACAAGGGAGTGCTTATGGCCCAGAAAGAAGGTAAAA
GAGATCAACGCGACAGAAGAGACATAGAAAACAAGCTTATGAACAATCAGCTTGGAGTAAGCTTTCATTC
TCATCTGCCTGAACTGCAGCTATTTCAAGGTGAGGGGAAAATGTATGAATGTAATCAAGTTGAGAAGTCT
ACCAACAATGGTTCCTCAGTGTCACCACTTCAACAAATTCCTTCTAGTGTCCAAACCCACAGGTCTAAAA
AATATCATGAACTTAACCATTTTTCATTACTCACACAAAGACGAAAAGCAAACAGTTGTGGAAAACCTTA
TAAATGTAATGAATGTGGCAAGGCGTTCACTCAGAATTCGAACCTTACAAGTCATAGGAGAATTCATAGT
GGAGAGAAGCCTTACAAATGCAGTGAGTGCGGCAAAACCTTTACTGTTCGTTCAAATCTAACTATTCATC
AGGTCATCCATACTGGAGAAAAACCTTACAAATGTCATGAGTGTGGCAAGGTCTTCAGGCACAATTCATA
CCTTGCAACTCATCGGCGAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGAAAAGCCTTT
AGAGGACATTCAAACCTAACTACCCATCAGTTAATTCATACTGGAGAAAAACCGTTCAAATGTAATGAAT
GTGGCAAGCTCTTCACTCAAAATTCACACCTTATAAGTCATTGGAGAATTCACACTGGAGAGAAACCTTA
CAAGTGCAATGAGTGCGGCAAAGCCTTTAGTGTTCGTTCAAGCCTAGCAATCCATCAGACAATCCACACT
GGAGAAAAACCTTACAAATGTAATGAATGTGGCAAAGTCTTTAGGTACAATTCATACCTCGGAAGGCATC
GGAGAGTTCATACTGGTGAGAAACCTTACAAGTGTAATGAATGTGGCAAAGCCTTCAGTATGCATTCAAA
CCTAGCTACCCATCAGGTCATCCATACTGGAACAAAACCTTTCAAATGCAATGAATGCAGCAAGGTTTTC
ACTCAAAATTCACAACTTGCAAATCATCGAAGAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGT
GTGGGAAAGCCTTCAGTGTTCGTTCAAGTCTGACTACCCATCAGGCAATCCATTCTGGAGAGAAACCTTA
CAAATGTATTGAATGTGGCAAGAGCTTCACTCAAAAATCACACCTTAGAAGTCATCGGGGAATTCATTCT
GGAGAGAAACCTTACAAGTGTAATGAATGTGGTAAAGTCTTCGCTCAAACATCACAACTTGCAAGGCATT
GGAGAGTTCATACTGGAGAAAAACCTTACAAGTGTAATGACTGTGGCAGAGCCTTTAGTGATCGTTCAAG
CCTAACTTTTCATCAGGCAATACATACTGGAGAGAAACCTTACAAATGTCATGAATGCGGCAAGGTTTTT
AGGCACAATTCATACCTTGCAACTCATCGGCGAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGT
GTGGGAAAGCCTTTAGTATGCATTCAAACCTAACTACCCATAAGGTCATCCATACTGGAGAGAAGCCTTA
CAAATGTAATCAATGTGGCAAGGTCTTCACTCAGAACTCACACCTTGCAAATCATCAAAGGACTCACACC
GGAGAGAAACCTTACCGATGCAATGAGTGTGGGAAAGCCTTCAGTGTTCGTTCAAGCCTAACCACCCATC
AGGCAATCCATACTGGGAAAAAACCTTACAAATGTAATGAATGTGGCAAGGTCTTTACTCAAAATGCTCA
CCTGGCAAATCACCGAAGAATTCATACTGGGGAGAAACCTTACAGGTGTACAGAGTGTGGGAAAGCCTTT
AGGGTAAGATCAAGTCTAACTACCCATATGGCAATCCACACTGGAGAAAAGCGTTACAAATGTAATGAGT
GTGGCAAGGTCTTCAGGCAGAGTTCAAATCTTGCAAGTCATCACAGAATGCATACCGGAGAGAAACCTTA
CAAATGA

Translation (818 aa):
MALTQVRLTFRDVAIEFSQEEWKCLDPAQRILYRDVMLENYWNLVSLGLCHFDMNIISMLEEGKEPWTVK
SCVKIARKPRTPECVKGVVTDIPPKCTIKDLLPKEKSSTEAVFHTVVLERHESPDIEDFSFKEPQKNVHD
FECQWRDDTGNYKGVLMAQKEGKRDQRDRRDIENKLMNNQLGVSFHSHLPELQLFQGEGKMYECNQVEKS
TNNGSSVSPLQQIPSSVQTHRSKKYHELNHFSLLTQRRKANSCGKPYKCNECGKAFTQNSNLTSHRRIHS
GEKPYKCSECGKTFTVRSNLTIHQVIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAF
RGHSNLTTHQLIHTGEKPFKCNECGKLFTQNSHLISHWRIHTGEKPYKCNECGKAFSVRSSLAIHQTIHT
GEKPYKCNECGKVFRYNSYLGRHRRVHTGEKPYKCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVF
TQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTHQAIHSGEKPYKCIECGKSFTQKSHLRSHRGIHS
GEKPYKCNECGKVFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVF
RHNSYLATHRRIHTGEKPYKCNECGKAFSMHSNLTTHKVIHTGEKPYKCNQCGKVFTQNSHLANHQRTHT
GEKPYRCNECGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNAHLANHRRIHTGEKPYRCTECGKAF
RVRSSLTTHMAIHTGEKRYKCNECGKVFRQSSNLASHHRMHTGEKPYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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