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Report for CCDS21857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21857.1 Public Mus musculus 7 AI467606 23 108 98 CCDS HistoryNCBI Gene:101602Re-query CCDS DB by CCDS ID:21857.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21857.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056288.6 ENSMUSP00000063016.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056288.6Link to Ensembl Protein Viewer:ENSMUSP00000063016.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000056288Re-query CCDS DB by Protein ID:ENSMUSP00000063016
Original member Current member EBI ENSMUST00000206102.1 ENSMUSP00000146315.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206102.1Link to Ensembl Protein Viewer:ENSMUSP00000146315.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206102Re-query CCDS DB by Protein ID:ENSMUSP00000146315
Original member Current member NCBI NM_178901.3 NP_849232.1 Accepted alive Link to Nucleotide Sequence:NM_178901.3Link to Protein Sequence:NP_849232.1Re-query CCDS DB by Nucleotide ID:NM_178901Re-query CCDS DB by Protein ID:NP_849232Link to BLAST:NP_849232.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849232.1 225 Q8C708 225 100% 0 0

Chromosomal Locations for CCDS 21857.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127092255 127092932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGCCAGTGACGCCTCAGCAGCCCTCTGGGCACACGGAGGGGCTCCCTGAGCCTACAGCGGAGGCAGCAG
TGTGGGTAGTAATCCCCTGTGGACCTTGTATTCCCATCATGCTGGGCCTGGCCTCTCTCACAGCCTTCTT
CATCATAACTACTGCTGTACTGGCCGAACGCCTGTTCCGCCGCCCGCAACCAGACCCCAGCCAGCGTGCC
CCCACCCTAGTCTGGCGCCCTGGAGGAGAACTGTGGATTGAGCCCACGAGCAGCGCCCGGGAGCGCTCTG
AGGATTGGTACGGCTCCTCCATGCCTCTGCTGATGGACAGGGCTCCAGGTCCCCCAACACCCGGTGGCAC
CTTAGAGGGCAGAGCAACTGCTCCACCAGCCACTTCAGCCCCATACTCTTCCCTCAGTTCTCTAGTTCCT
CAGACCCCACCAGAAGTCCCAGCCCAGAGCACCTTCTGGAGGCCTCAGACCCAAGAGGAGAGGCCCCATG
ACACAAGCCTGGTGAGCTGGGTTGGGTCTGAGCCCATGCCAGAGGCTGGCTTGCAGGTTGGGAGCCCCAG
GCCTTGGAGGCCGAGGCAAGGGAGCCTGGAACCTGATTGGGGTCTCCAGCCTCGGGTCACCCTGGAGCAG
ATCTCAGCATTCTGGAAGAGGGAAGGCCGGACCAGCGTGGGCTTCTGA

Translation (225 aa):
MPVTPQQPSGHTEGLPEPTAEAAVWVVIPCGPCIPIMLGLASLTAFFIITTAVLAERLFRRPQPDPSQRA
PTLVWRPGGELWIEPTSSARERSEDWYGSSMPLLMDRAPGPPTPGGTLEGRATAPPATSAPYSSLSSLVP
QTPPEVPAQSTFWRPQTQEERPHDTSLVSWVGSEPMPEAGLQVGSPRPWRPRQGSLEPDWGLQPRVTLEQ
ISAFWKREGRTSVGF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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