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Report for CCDS5043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5043.1 Public Homo sapiens 6 PNISR 24 110 108 CCDS HistoryNCBI Gene:25957Re-query CCDS DB by CCDS ID:5043.1Re-query CCDS DB by GeneID:25957See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5043.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369239.10 ENSP00000358242.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369239.10Link to Ensembl Protein Viewer:ENSP00000358242.5Re-query CCDS DB by Nucleotide ID:ENST00000369239Re-query CCDS DB by Protein ID:ENSP00000358242
Original member Current member EBI ENST00000438806.5 ENSP00000387997.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438806.5Link to Ensembl Protein Viewer:ENSP00000387997.1Re-query CCDS DB by Nucleotide ID:ENST00000438806Re-query CCDS DB by Protein ID:ENSP00000387997
Original member Current member EBI ENST00000647811.1 ENSP00000496842.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647811.1Link to Ensembl Protein Viewer:ENSP00000496842.1Re-query CCDS DB by Nucleotide ID:ENST00000647811Re-query CCDS DB by Protein ID:ENSP00000496842
Original member Current member NCBI NM_001322405.2 NP_001309334.1 Accepted alive Link to Nucleotide Sequence:NM_001322405.2Link to Protein Sequence:NP_001309334.1Re-query CCDS DB by Nucleotide ID:NM_001322405Re-query CCDS DB by Protein ID:NP_001309334Link to BLAST:NP_001309334.1
Original member Current member NCBI NM_001322406.2 NP_001309335.1 Accepted alive Link to Nucleotide Sequence:NM_001322406.2Link to Protein Sequence:NP_001309335.1Re-query CCDS DB by Nucleotide ID:NM_001322406Re-query CCDS DB by Protein ID:NP_001309335Link to BLAST:NP_001309335.1
Original member Current member NCBI NM_001322408.2 NP_001309337.1 Accepted alive Link to Nucleotide Sequence:NM_001322408.2Link to Protein Sequence:NP_001309337.1Re-query CCDS DB by Nucleotide ID:NM_001322408Re-query CCDS DB by Protein ID:NP_001309337Link to BLAST:NP_001309337.1
Original member Current member NCBI NM_015491.3 NP_056306.1 Accepted alive Link to Nucleotide Sequence:NM_015491.3Link to Protein Sequence:NP_056306.1Re-query CCDS DB by Nucleotide ID:NM_015491Re-query CCDS DB by Protein ID:NP_056306Link to BLAST:NP_056306.1
Original member Current member NCBI NM_032870.4 NP_116259.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032870.4Link to Protein Sequence:NP_116259.2Re-query CCDS DB by Nucleotide ID:NM_032870Re-query CCDS DB by Protein ID:NP_116259Link to BLAST:NP_116259.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309334.1 805 Q8TF01-1 805 100% 0 0
NP_001309335.1 805 Q8TF01-1 805 100% 0 0
NP_001309337.1 805 Q8TF01-1 805 100% 0 0
NP_056306.1 805 Q8TF01-1 805 100% 0 0
NP_116259.2 805 Q8TF01-1 805 100% 0 0

Chromosomal Locations for CCDS 5043.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 99400540 99401630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99402540 99402710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99403829 99403882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99404603 99404702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99406031 99406168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99408081 99408271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99409173 99409344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99410741 99410964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99412551 99412739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99414572 99414659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2418 nt):
ATGTGGGATCAAGGAGGACAGCCTTGGCAGCAGTGGCCCTTGAACCAGCAACAATGGATGCAGTCATTCC
AGCACCAACAGGATCCAAGCCAGATTGATTGGGCTGCATTGGCCCAAGCTTGGATTGCCCAAAGAGAAGC
TTCAGGACAGCAAAGCATGGTAGAACAACCACCAGGAATGATGCCAAATGGACAAGATATGTCTACAATG
GAATCTGGTCCAAACAATCATGGGAATTTCCAAGGGGATTCAAACTTCAACAGAATGTGGCAACCAGAAT
GGGGAATGCATCAGCAACCCCCACACCCCCCTCCAGATCAGCCATGGATGCCACCAACACCAGGCCCAAT
GGACATTGTTCCTCCTTCTGAAGACAGCAACAGTCAGGACAGTGGGGAATTTGCCCCTGACAACAGGCAT
ATATTTAACCAGAACAATCACAACTTTGGTGGACCACCCGATAATTTTGCAGTGGGGCCAGTGAACCAGT
TTGACTATCAGCATGGGGCTGCTTTTGGTCCACCGCAAGGTGGATTTCATCCTCCTTATTGGCAACCAGG
ACCTCCAGGACCTCCAGCACCTCCCCAGAATCGAAGAGAAAGGCCATCATCATTCAGGGATCGTCAGCGT
TCACCTATTGCACTTCCTGTGAAGCAGGAGCCTCCACAAATTGACGCAGTAAAACGCAGGACTCTTCCCG
CTTGGATTCGCGAAGGTCTTGAAAAAATGGAACGTGAAAAGCAGAAGAAATTGGAGAAAGAAAGAATGGA
ACAACAACGTTCACAATTGTCCAAAAAAGAAAAAAAGGCCACAGAAGATGCTGAAGGAGGGGATGGCCCT
CGTTTACCTCAGAGAAGTAAATTTGATAGTGATGAGGAAGAAGAAGACACTGAAAATGTTGAGGCTGCAA
GTAGTGGGAAAGTCACCAGAAGTCCATCCCCAGTTCCTCAAGAAGAGCACAGTGACCCTGAGATGACTGA
AGAGGAGAAAGAGTATCAAATGATGTTGCTGACAAAAATGCTTCTAACAGAAATTCTGCTGGATGTCACA
GATGAAGAAATTTATTACGTAGCCAAAGATGCACACCGCAAAGCAACGAAAGCTCCTGCAAAACAGCTGG
CACAGTCCAGTGCACTGGCTTCCCTCACTGGACTCGGTGGACTGGGTGGTTATGGATCAGGAGACAGTGA
AGATGAGAGGAGTGACAGAGGATCTGAGTCATCTGACACTGATGATGAAGAATTACGGCATCGAATCCGG
CAAAAACAGGAAGCTTTTTGGAGAAAAGAAAAAGAACAGCAGCTATTACATGATAAACAGATGGAAGAAG
AAAAGCAGCAAACAGAAAGGGTTACAAAAGAGATGAATGAATTTATCCATAAAGAGCAAAATAGTTTATC
ACTACTAGAAGCAAGAGAAGCAGACGGTGATGTGGTTAATGAAAAGAAGAGAACTCCAAATGAAACCACA
TCAGTTTTAGAACCAAAAAAAGAGCATAAAGAAAAAGAAAAACAAGGAAGGAGTAGGTCGGGAAGTTCTA
GTAGTGGTAGTTCCAGTAGCAATAGCAGAACTAGTAGTACTAGTAGTACTGTCTCTAGCTCTTCATACAG
TTCTAGCTCAGGTAGTAGTCGTACTTCTTCTCGGTCTTCTTCTCCTAAAAGGAAAAAGAGACACAGTAGG
AGTAGATCTCCAACAATCAAAGCTAGACGTAGCAGGAGTAGAAGCTATTCTCGCAGAATTAAAATAGAGA
GCAATAGGGCTAGGGTAAAGATTAGAGATAGAAGGAGATCTAATAGAAATAGCATTGAAAGAGAAAGACG
ACGAAATCGGAGTCCTTCCCGAGAGAGACGTAGAAGTAGAAGTCGCTCAAGGGATAGACGAACCAATCGT
GCCAGTCGCAGTAGGAGTCGAGATAGGCGTAAAATTGATGATCAACGTGGAAATCTTAGTGGGAACAGTC
ATAAGCATAAAGGTGAGGCTAAAGAACAAGAGAGGAAAAAGGAGAGGAGTCGAAGTATAGATAAAGATAG
GAAAAAGAAAGACAAAGAAAGGGAACGTGAACAGGATAAAAGAAAAGAGAAACAAAAAAGGGAAGAAAAA
GATTTTAAGTTCAGTAGTCAGGATGATAGATTAAAAAGGAAACGAGAAAGTGAAAGAACATTTTCTAGGA
GTGGTTCTATATCTGTTAAAATCATAAGACATGATTCTAGACAGGATAGTAAGAAAAGTACTACCAAAGA
TAGTAAAAAACATTCAGGCTCTGATTCTAGTGGAAGGAGCAGTTCTGAGTCTCCAGGAAGTAGCAAAGAA
AAGAAGGCTAAGAAGCCTAAACATAGTCGATCGCGATCCGTGGAGAAATCTCAAAGGTCTGGTAAGAAGG
CAAGCCGCAAACACAAGTCTAAGTCCCGATCAAGGTAG

Translation (805 aa):
MWDQGGQPWQQWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQREASGQQSMVEQPPGMMPNGQDMSTM
ESGPNNHGNFQGDSNFNRMWQPEWGMHQQPPHPPPDQPWMPPTPGPMDIVPPSEDSNSQDSGEFAPDNRH
IFNQNNHNFGGPPDNFAVGPVNQFDYQHGAAFGPPQGGFHPPYWQPGPPGPPAPPQNRRERPSSFRDRQR
SPIALPVKQEPPQIDAVKRRTLPAWIREGLEKMEREKQKKLEKERMEQQRSQLSKKEKKATEDAEGGDGP
RLPQRSKFDSDEEEEDTENVEAASSGKVTRSPSPVPQEEHSDPEMTEEEKEYQMMLLTKMLLTEILLDVT
DEEIYYVAKDAHRKATKAPAKQLAQSSALASLTGLGGLGGYGSGDSEDERSDRGSESSDTDDEELRHRIR
QKQEAFWRKEKEQQLLHDKQMEEEKQQTERVTKEMNEFIHKEQNSLSLLEAREADGDVVNEKKRTPNETT
SVLEPKKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSR
SRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNRSPSRERRRSRSRSRDRRTNR
ASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEK
DFKFSSQDDRLKRKRESERTFSRSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSESPGSSKE
KKAKKPKHSRSRSVEKSQRSGKKASRKHKSKSRSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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