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Report for CCDS83328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83328.1 Public Homo sapiens 8 EFR3A 24 110 108 CCDS HistoryNCBI Gene:23167Re-query CCDS DB by CCDS ID:83328.1Re-query CCDS DB by GeneID:23167See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83328.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000519656.1 ENSP00000428086.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519656.1Link to Ensembl Protein Viewer:ENSP00000428086.1Re-query CCDS DB by Nucleotide ID:ENST00000519656Re-query CCDS DB by Protein ID:ENSP00000428086
Original member Current member NCBI NM_001323553.2 NP_001310482.1 Accepted alive Link to Nucleotide Sequence:NM_001323553.2Link to Protein Sequence:NP_001310482.1Re-query CCDS DB by Nucleotide ID:NM_001323553Re-query CCDS DB by Protein ID:NP_001310482Link to BLAST:NP_001310482.1
Original member Current member NCBI NM_001323554.2 NP_001310483.1 Accepted alive Link to Nucleotide Sequence:NM_001323554.2Link to Protein Sequence:NP_001310483.1Re-query CCDS DB by Nucleotide ID:NM_001323554Re-query CCDS DB by Protein ID:NP_001310483Link to BLAST:NP_001310483.1
Original member Current member NCBI NM_001323555.2 NP_001310484.1 Accepted alive Link to Nucleotide Sequence:NM_001323555.2Link to Protein Sequence:NP_001310484.1Re-query CCDS DB by Nucleotide ID:NM_001323555Re-query CCDS DB by Protein ID:NP_001310484Link to BLAST:NP_001310484.1
Original member Current member NCBI NM_001323556.2 NP_001310485.1 Accepted alive Link to Nucleotide Sequence:NM_001323556.2Link to Protein Sequence:NP_001310485.1Re-query CCDS DB by Nucleotide ID:NM_001323556Re-query CCDS DB by Protein ID:NP_001310485Link to BLAST:NP_001310485.1
Original member Current member NCBI NM_001323557.2 NP_001310486.1 Accepted alive Link to Nucleotide Sequence:NM_001323557.2Link to Protein Sequence:NP_001310486.1Re-query CCDS DB by Nucleotide ID:NM_001323557Re-query CCDS DB by Protein ID:NP_001310486Link to BLAST:NP_001310486.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001310482.1 785 Q14156-2 785 100% 0 0
NP_001310483.1 785 Q14156-2 785 100% 0 0
NP_001310484.1 785 Q14156-2 785 100% 0 0
NP_001310485.1 785 Q14156-2 785 100% 0 0
NP_001310486.1 785 Q14156-2 785 100% 0 0

Chromosomal Locations for CCDS 83328.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 131944766 131944872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131946483 131946633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131949969 131950090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131953818 131953967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131955768 131955905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131959585 131959663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131968295 131968430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131970476 131970643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131976027 131976141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131977041 131977092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131978847 131979019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131979346 131979421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131984139 131984300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131984929 131985060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131986194 131986261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131987575 131987702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131996406 131996497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132001759 132001807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132002603 132002706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132003236 132003285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132010790 132010895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2358 nt):
ATGGAGAAATTGACATTTTATGCAGTATCTGCTCCAGAGAAACTGGATCGAATTGGTTCTTACCTGGCAG
AAAGGTTGAGCAGGGATGTTGTCAGACATCGTTCTGGGTATGTTTTGATTGCTATGGAGGCACTGGACCA
ACTTCTCATGGCTTGCCATTCTCAAAGCATTAAGCCATTTGTAGAAAGCTTTCTTCATATGGTGGCAAAG
CTGCTGGAATCGGGGGAACCAAAGCTTCAAGTTCTTGGAACAAATTCTTTTGTCAAATTTGCAAATATTG
AAGAAGACACACCATCCTATCACAGACGTTATGACTTTTTTGTGTCTCGATTCAGTGCCATGTGCCATTC
CTGTCATAGTGATCCAGAAATACGAACAGAGATACGAATTGCTGGAATTAGAGGTATTCAAGGTGTGGTT
CGCAAAACAGTCAACGATGAACTTCGGGCCACCATTTGGGAACCTCAGCATATGGATAAGATTGTTCCAT
CCCTCCTGTTTAACATGCAAAAGATAGAAGAAGTTGACAGTCGCATAGGCCCTCCTTCTTCTCCTTCTGC
AACTGACAAAGAAGAGAATCCTGCTGTGCTGGCTGAAAACTGTTTCAGAGAACTGCTGGGTCGAGCAACT
TTTGGGAATATGAATAATGCTGTTAGACCAGTTTTTGCGCATTTAGATCATCACAAACTGTGGGATCCCA
ATGAATTTGCAGTTCACTGCTTTAAAATTATAATGTATTCCATTCAGGCTCAGTATTCTCACCATGTGAT
CCAGGAGATTCTAGGACACCTTGATGCTCGTAAAAAAGATGCTCCCCGGGTTCGAGCAGGTATTATTCAG
GTTCTGTTAGAGGCTGTTGCCATTGCTGCTAAAGGTTCCATAGGTCCGACAGTGCTGGAAGTCTTCAATA
CCCTTTTGAAACATCTGCGTCTCAGCGTTGAATTCGAAGCAAATGATTTACAGGGGGGATCTGTAGGCAG
TGTCAACTTAAATACAAGTTCCAAAGACAATGATGAGAAGATTGTGCAGAATGCTATCATCCAAACAATA
GGATTTTTTGGAAGTAACCTACCAGATTATCAGAGGTCAGAAATCATGATGTTCATTATGGGGAAAGTAC
CTGTCTTTGGAACATCTACCCATACTTTGGATATCAGTCAACTAGGGGATTTGGGAACCAGGAGAATTCA
GATAATGTTGCTGAGATCTTTGCTTATGGTGACCTCTGGATATAAAGCGAAGACGATTGTTACTGCACTG
CCAGGGTCTTTCCTGGATCCTTTGTTATCACCATCTCTCATGGAGGACTACGAACTGAGACAGTTGGTCT
TGGAAGTAATGCATAATCTCATGGATCGTCATGACAATAGGGCAAAGCTTCGAGGGATCAGAATAATACC
GGATGTAGCTGACCTAAAGATAAAAAGAGAAAAAATTTGCAGACAAGACACAAGTTTCATGAAAAAGAAT
GGGCAACAGCTGTATCGGCACATATATTTGGGTTGTAAAGAGGAAGACAACGTTCAGAAAAACTATGAAC
TACTTTATACTTCTCTTGCTCTTATAACTATTGAACTGGCTAATGAAGAAGTAGTTATTGATCTCATTCG
ACTGGCCATTGCTTTACAGGACAGTGCAATTATCAATGAGGATAATTTGCCAATGTTCCATCGTTGTGGA
ATCATGGCACTGGTTGCAGCATACCTCAACTTTGTAAGTCAGATGATAGCTGTCCCTGCATTTTGCCAGC
ATGTTAGCAAGGTTATTGAAATTCGAACTATGGAAGCCCCTTATTTTCTACCAGAGCATATCTTCAGAGA
TAAGTGCATGCTTCCAAAATCTTTAGAGAAGCATGAAAAAGATTTGTACTTTCTGACCAACAAGATTGCA
GAGTCGCTAGGTGGAAGTGGATATAGTGTTGAGAGATTGTCAGTTCCGTATGTACCACAAGTAACAGATG
AAGATCGACTTTCTAGAAGAAAAAGCATTGTGGACACCGTATCCATTCAGGTGGATATTTTATCCAACAA
TGTTCCTTCTGATGATGTGGTTAGTAACACTGAAGAAATCACTTTTGAAGCATTGAAGAAAGCAATTGAT
ACCAGTGGAATGGAAGAACAGGAAAAGGAAAAGAGGCGTCTTGTGATAGAGAAATTTCAGAAAGCACCTT
TTGAAGAAATAGCAGCACAGTGTGAATCCAAAGCAAATTTGCTTCATGATAGACTTGCCCAAATATTGGA
ACTCACCATACGTCCTCCTCCCAGTCCATCAGGAACACTGACCATTACTTCTGGGCATGCCCAATACCAA
TCTGTCCCAGTCTATGAGATGAAGTTTCCAGATCTGTGTGTGTACTGA

Translation (785 aa):
MEKLTFYAVSAPEKLDRIGSYLAERLSRDVVRHRSGYVLIAMEALDQLLMACHSQSIKPFVESFLHMVAK
LLESGEPKLQVLGTNSFVKFANIEEDTPSYHRRYDFFVSRFSAMCHSCHSDPEIRTEIRIAGIRGIQGVV
RKTVNDELRATIWEPQHMDKIVPSLLFNMQKIEEVDSRIGPPSSPSATDKEENPAVLAENCFRELLGRAT
FGNMNNAVRPVFAHLDHHKLWDPNEFAVHCFKIIMYSIQAQYSHHVIQEILGHLDARKKDAPRVRAGIIQ
VLLEAVAIAAKGSIGPTVLEVFNTLLKHLRLSVEFEANDLQGGSVGSVNLNTSSKDNDEKIVQNAIIQTI
GFFGSNLPDYQRSEIMMFIMGKVPVFGTSTHTLDISQLGDLGTRRIQIMLLRSLLMVTSGYKAKTIVTAL
PGSFLDPLLSPSLMEDYELRQLVLEVMHNLMDRHDNRAKLRGIRIIPDVADLKIKREKICRQDTSFMKKN
GQQLYRHIYLGCKEEDNVQKNYELLYTSLALITIELANEEVVIDLIRLAIALQDSAIINEDNLPMFHRCG
IMALVAAYLNFVSQMIAVPAFCQHVSKVIEIRTMEAPYFLPEHIFRDKCMLPKSLEKHEKDLYFLTNKIA
ESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQVDILSNNVPSDDVVSNTEEITFEALKKAID
TSGMEEQEKEKRRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQILELTIRPPPSPSGTLTITSGHAQYQ
SVPVYEMKFPDLCVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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