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Report for CCDS75315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75315.1 Public Homo sapiens 5 CTNNA1 24 110 108 CCDS HistoryNCBI Gene:1495Re-query CCDS DB by CCDS ID:75315.1Re-query CCDS DB by GeneID:1495See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 75315.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540387.5 ENSP00000438476.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540387.5Link to Ensembl Protein Viewer:ENSP00000438476.1Re-query CCDS DB by Nucleotide ID:ENST00000540387Re-query CCDS DB by Protein ID:ENSP00000438476
Original member Current member NCBI NM_001290312.1 NP_001277241.1 Accepted alive Link to Nucleotide Sequence:NM_001290312.1Link to Protein Sequence:NP_001277241.1Re-query CCDS DB by Nucleotide ID:NM_001290312Re-query CCDS DB by Protein ID:NP_001277241Link to BLAST:NP_001277241.1
Original member Current member NCBI NM_001323987.1 NP_001310916.1 Accepted alive Link to Nucleotide Sequence:NM_001323987.1Link to Protein Sequence:NP_001310916.1Re-query CCDS DB by Nucleotide ID:NM_001323987Re-query CCDS DB by Protein ID:NP_001310916Link to BLAST:NP_001310916.1
Original member Current member NCBI NM_001323988.1 NP_001310917.1 Accepted alive Link to Nucleotide Sequence:NM_001323988.1Link to Protein Sequence:NP_001310917.1Re-query CCDS DB by Nucleotide ID:NM_001323988Re-query CCDS DB by Protein ID:NP_001310917Link to BLAST:NP_001310917.1
Original member Current member NCBI NM_001323989.1 NP_001310918.1 Accepted alive Link to Nucleotide Sequence:NM_001323989.1Link to Protein Sequence:NP_001310918.1Re-query CCDS DB by Nucleotide ID:NM_001323989Re-query CCDS DB by Protein ID:NP_001310918Link to BLAST:NP_001310918.1
Original member Current member NCBI NM_001323990.1 NP_001310919.1 Accepted alive Link to Nucleotide Sequence:NM_001323990.1Link to Protein Sequence:NP_001310919.1Re-query CCDS DB by Nucleotide ID:NM_001323990Re-query CCDS DB by Protein ID:NP_001310919Link to BLAST:NP_001310919.1
Original member Current member NCBI NM_001323991.1 NP_001310920.1 Accepted alive Link to Nucleotide Sequence:NM_001323991.1Link to Protein Sequence:NP_001310920.1Re-query CCDS DB by Nucleotide ID:NM_001323991Re-query CCDS DB by Protein ID:NP_001310920Link to BLAST:NP_001310920.1
Original member Current member NCBI NM_001323992.1 NP_001310921.1 Accepted alive Link to Nucleotide Sequence:NM_001323992.1Link to Protein Sequence:NP_001310921.1Re-query CCDS DB by Nucleotide ID:NM_001323992Re-query CCDS DB by Protein ID:NP_001310921Link to BLAST:NP_001310921.1
Original member Current member NCBI NM_001323993.1 NP_001310922.1 Accepted alive Link to Nucleotide Sequence:NM_001323993.1Link to Protein Sequence:NP_001310922.1Re-query CCDS DB by Nucleotide ID:NM_001323993Re-query CCDS DB by Protein ID:NP_001310922Link to BLAST:NP_001310922.1
Original member Current member NCBI NM_001323994.1 NP_001310923.1 Accepted alive Link to Nucleotide Sequence:NM_001323994.1Link to Protein Sequence:NP_001310923.1Re-query CCDS DB by Nucleotide ID:NM_001323994Re-query CCDS DB by Protein ID:NP_001310923Link to BLAST:NP_001310923.1
Original member Current member NCBI NM_001323995.1 NP_001310924.1 Accepted alive Link to Nucleotide Sequence:NM_001323995.1Link to Protein Sequence:NP_001310924.1Re-query CCDS DB by Nucleotide ID:NM_001323995Re-query CCDS DB by Protein ID:NP_001310924Link to BLAST:NP_001310924.1
Original member Current member NCBI NM_001323996.1 NP_001310925.1 Accepted alive Link to Nucleotide Sequence:NM_001323996.1Link to Protein Sequence:NP_001310925.1Re-query CCDS DB by Nucleotide ID:NM_001323996Re-query CCDS DB by Protein ID:NP_001310925Link to BLAST:NP_001310925.1
Original member Current member NCBI NM_001323997.1 NP_001310926.1 Accepted alive Link to Nucleotide Sequence:NM_001323997.1Link to Protein Sequence:NP_001310926.1Re-query CCDS DB by Nucleotide ID:NM_001323997Re-query CCDS DB by Protein ID:NP_001310926Link to BLAST:NP_001310926.1
Original member Current member NCBI NM_001323998.1 NP_001310927.1 Accepted alive Link to Nucleotide Sequence:NM_001323998.1Link to Protein Sequence:NP_001310927.1Re-query CCDS DB by Nucleotide ID:NM_001323998Re-query CCDS DB by Protein ID:NP_001310927Link to BLAST:NP_001310927.1
Original member Current member NCBI NM_001323999.1 NP_001310928.1 Accepted alive Link to Nucleotide Sequence:NM_001323999.1Link to Protein Sequence:NP_001310928.1Re-query CCDS DB by Nucleotide ID:NM_001323999Re-query CCDS DB by Protein ID:NP_001310928Link to BLAST:NP_001310928.1
Original member Current member NCBI NM_001324000.1 NP_001310929.1 Accepted alive Link to Nucleotide Sequence:NM_001324000.1Link to Protein Sequence:NP_001310929.1Re-query CCDS DB by Nucleotide ID:NM_001324000Re-query CCDS DB by Protein ID:NP_001310929Link to BLAST:NP_001310929.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277241.1 536 P35221-3 536 100% 0 0
NP_001310916.1 536 P35221-3 536 100% 0 0
NP_001310917.1 536 P35221-3 536 100% 0 0
NP_001310918.1 536 P35221-3 536 100% 0 0
NP_001310919.1 536 P35221-3 536 100% 0 0
NP_001310920.1 536 P35221-3 536 100% 0 0
NP_001310921.1 536 P35221-3 536 100% 0 0
NP_001310922.1 536 P35221-3 536 100% 0 0
NP_001310923.1 536 P35221-3 536 100% 0 0
NP_001310924.1 536 P35221-3 536 100% 0 0
NP_001310925.1 536 P35221-3 536 100% 0 0
NP_001310926.1 536 P35221-3 536 100% 0 0
NP_001310927.1 536 P35221-3 536 100% 0 0
NP_001310928.1 536 P35221-3 536 100% 0 0
NP_001310929.1 536 P35221-3 536 100% 0 0

Chromosomal Locations for CCDS 75315.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138886260 138886292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138887490 138887642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138904349 138904441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138917742 138917898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138924510 138924710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138925256 138925407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138929246 138929356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138930473 138930654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138930830 138930935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138932578 138932712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138933802 138934089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGACCAAGAAGACCAGGGACTTGCGTAGACAGCTCCGCAAAGCTGTCATGGACCACGTTTCAGATTCTT
TCCTGGAAACCAATGTTCCACTTTTGGTATTGATTGAAGCTGCAAAGAATGGAAATGAGAAAGAAGTTAA
GGAGTATGCCCAAGTTTTCCGTGAACATGCCAACAAATTGATTGAGGTTGCCAACTTGGCCTGTTCCATC
TCAAATAATGAAGAAGGTGTAAAGCTTGTTCGAATGTCTGCAAGCCAGTTAGAAGCCCTCTGTCCTCAGG
TTATTAATGCTGCACTGGCTTTAGCAGCAAAACCACAGAGTAAACTGGCCCAAGAGAACATGGATCTTTT
TAAAGAACAATGGGAAAAACAAGTCCGTGTTCTCACAGATGCTGTCGATGACATTACTTCCATTGATGAC
TTCTTGGCTGTCTCAGAGAATCACATTTTGGAAGATGTGAACAAATGTGTCATTGCTCTCCAAGAGAAGG
ATGTGGATGGCCTGGACCGCACAGCTGGTGCAATTCGAGGCCGGGCAGCCCGGGTCATTCACGTAGTCAC
CTCAGAGATGGACAACTATGAGCCAGGAGTCTACACAGAGAAGGTTCTGGAAGCCACTAAGCTGCTCTCC
AACACAGTCATGCCACGTTTTACTGAGCAAGTAGAAGCAGCCGTGGAAGCCCTCAGCTCGGACCCTGCCC
AGCCCATGGATGAGAATGAGTTTATCGATGCTTCCCGCCTGGTATATGATGGCATCCGGGACATCAGGAA
AGCAGTGCTGATGATAAGGACCCCTGAGGAGTTGGATGACTCTGACTTTGAGACAGAAGATTTTGATGTC
AGAAGCAGGACGAGCGTCCAGACAGAAGACGATCAGCTGATAGCTGGCCAGAGTGCCCGGGCGATCATGG
CTCAGCTTCCCCAGGAGCAAAAAGCGAAGATTGCGGAACAGGTGGCCAGCTTCCAGGAAGAAAAGAGCAA
GCTGGATGCTGAAGTGTCCAAATGGGACGACAGTGGCAATGACATCATTGTGCTGGCCAAGCAGATGTGC
ATGATTATGATGGAGATGACAGACTTTACCCGAGGTAAAGGACCACTCAAAAATACATCGGATGTCATCA
GTGCTGCCAAGAAAATTGCTGAGGCAGGATCCAGGATGGACAAGCTTGGCCGCACCATTGCAGACCATTG
CCCCGACTCGGCTTGCAAGCAGGACCTGCTGGCCTACCTGCAACGCATCGCCCTCTACTGCCACCAGCTG
AACATCTGCAGCAAGGTCAAGGCCGAGGTGCAGAATCTCGGCGGGGAGCTTGTTGTCTCTGGGGTGGACA
GCGCCATGTCCCTGATCCAGGCAGCCAAGAACTTGATGAATGCTGTGGTGCAGACAGTGAAGGCATCCTA
CGTCGCCTCTACCAAATACCAAAAGTCACAGGGTATGGCTTCCCTCAACCTTCCTGCTGTGTCATGGAAG
ATGAAGGCACCAGAGAAAAAGCCATTGGTGAAGAGAGAGAAACAGGATGAGACACAGACCAAGATTAAAC
GGGCATCTCAGAAGAAGCACGTGAACCCGGTGCAGGCCCTCAGCGAGTTCAAAGCTATGGACAGCATCTA
A

Translation (536 aa):
MTKKTRDLRRQLRKAVMDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSI
SNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVDDITSIDD
FLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLS
NTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLMIRTPEELDDSDFETEDFDV
RSRTSVQTEDDQLIAGQSARAIMAQLPQEQKAKIAEQVASFQEEKSKLDAEVSKWDDSGNDIIVLAKQMC
MIMMEMTDFTRGKGPLKNTSDVISAAKKIAEAGSRMDKLGRTIADHCPDSACKQDLLAYLQRIALYCHQL
NICSKVKAEVQNLGGELVVSGVDSAMSLIQAAKNLMNAVVQTVKASYVASTKYQKSQGMASLNLPAVSWK
MKAPEKKPLVKREKQDETQTKIKRASQKKHVNPVQALSEFKAMDSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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